Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_027351.1
Length=147745
Score E
Sequences producing significant alignments: (Bits) Value
seq134695 96.9 3e-15
seq3046662 93.3 4e-14
seq302243 93.3 4e-14
>seq134695
Length=2551
Score = 96.9 bits (106), Expect = 3e-15
Identities = 197/286 (69%), Gaps = 10/286 (3%)
Strand=Plus/Minus
Query 106065 GCCATCGCATTAATAGTCAGATCCCGACGAGACAGGTCTTCTGCCAGTGTTACATCAGGG 106124
||||| || || || ||||| || || ||| |||||||||| |||| || || || |||
Sbjct 552 GCCATGGCGTTGATGGTCAGGTCGCGGCGAATCAGGTCTTCTTCCAGCGTGACCTCGGGG 493
Query 106125 CTGAA---AAAGGTCTCAAAACCTTTGTGACCGCTTCCAACCTTACGTTCAGTTCGAGCG 106181
||| ||| | |||| || | ||| | || ||| ||||| || || |||
Sbjct 492 CTGGCGTGAAA---CACAAAGCCGCCATAACCCCGACCGCTCTTGCGTTCGGTGCGGGCG 436
Query 106182 AGCGCGTATTCTTCCTTGGTCTCCGGATGGAGGTATACCGGGAAGGAAGCGCCAACCTGG 106241
|| |||||||| || ||| || | ||| ||||||||||| |||||| || |||
Sbjct 435 AGGGCGTATTCATCGCCATTCTTTGGGTCCAGGAATACCGGGAAGTCAGCGCCGAC-TGG 377
Query 106242 ATGA-ACCCTTTTTCAATCATTTGTTC-GTGTGTTGCACCCACAACCACGTAGTCACGGT 106299
| | | ||||| | | ||||| ||| ||| || || |||||||| ||| ||| |
Sbjct 376 CTTATAGCCTTTGGCGAGCATTTCTTCAGTG-GTCGCGCCCACAACGACGCGGTCGATAT 318
Query 106300 CGTGGACTTCACGGCCCAGCAAACCGTCACGTACTGCGCCACCTAC 106345
|| ||| | | |||| |||| | ||||||||||| || || ||
Sbjct 317 CGGTGACCTTAAGGCCAAGCAGGCGATCACGTACTGCACCGCCGAC 272
>seq3046662
Length=1096
Score = 93.3 bits (102), Expect = 4e-14
Identities = 198/292 (68%), Gaps = 8/292 (3%)
Strand=Plus/Minus
Query 106058 ATCCTGAGCCATCGCATTAATAGTCAGATCCCGACGAGACAGGTCTTCTGCCAGTGTTAC 106117
||||| ||||| || || || ||||| || || ||| |||||| ||| |||| || ||
Sbjct 343 ATCCTCGGCCATGGCGTTGATGGTCAGGTCACGGCGAATCAGGTCCTCTTCCAGCGTCAC 284
Query 106118 ATCAGGGCTGAA---AAAGGTCTCAAAACCTTTGTGACCGCTTCCAACCTTACGTTCAGT 106174
|| |||||| ||| | |||| || || ||| | || ||| ||||| ||
Sbjct 283 CTCGGGGCTGGCGTGAAA---CACAAAGCCGCCGTAACCCCGACCGCTCTTGCGTTCGGT 227
Query 106175 TCGAGCGAGCGCGTATTCTTCCTTGGTCTCCGGATGGAGGTATACCGGGAAGGAAGCGCC 106234
|| ||||| |||||||| || | ||| || | ||| ||||||||||| ||||||
Sbjct 226 GCGGGCGAGGGCGTATTCGTCGCCGTTCTTGGGGTCCAGGAATACCGGGAAGTCAGCGCC 167
Query 106235 AACCTGGATGAACCCTTTTTCAATCATTTGTTC-GTGTGTTGCACCCACAACCACGTAGT 106293
|| | || | ||||| | | ||||||||| ||| || ||||| || || ||| ||
Sbjct 166 GACTGGCTTGTAGCCTTTGGCGAGCATTTGTTCAGTG-GTCGCACCGACCACAACGCGGT 108
Query 106294 CACGGTCGTGGACTTCACGGCCCAGCAAACCGTCACGTACTGCGCCACCTAC 106345
| ||| ||| | |||| |||| | ||||| || || || || ||
Sbjct 107 CGATATCGGTGACCTTGAGGCCGAGCAGGCGATCACGCACCGCACCGCCGAC 56
>seq302243
Length=1145
Score = 93.3 bits (102), Expect = 4e-14
Identities = 195/288 (68%), Gaps = 2/288 (1%)
Strand=Plus/Minus
Query 106059 TCCTGAGCCATCGCATTAATAGTCAGATCCCGACGAGACAGGTCTTCTGCCAGTGTTACA 106118
|||| ||||| || || || ||||| || |||||| |||||||||| |||| || ||
Sbjct 342 TCCTCCGCCATGGCGTTGATGGTCAGGTCGCGACGAATCAGGTCTTCTTCCAGCGTGACC 283
Query 106119 TCAGGGCTGAAAAAGGTCTCAAAACCTTTGTGACCGCTTCCAACCTTACGTTCAGTTCGA 106178
|| |||||| | | |||| || | ||| | ||| ||| || || || ||
Sbjct 282 TCGGGGCTGGCATGAAACACAAAGCCGCCATAACCCCGGCCACTCTTGCGCTCGGTGCGG 223
Query 106179 GCGAGCGCGTATTCTTCCTTGGTCTCCGGATGGAGGTATACCGGGAAGGAAGCGCCAACC 106238
|| || ||||| || || | | | ||| ||| ||||||||||| ||| || |||
Sbjct 222 GCCAGGGCGTACTCATCGCCGTTTTTCGGGGCCAGGAATACCGGGAAGTCAGCACCCACC 163
Query 106239 TGGATGAACCCTTTTTCAATCATTTGTTC-GTGTGTTGCACCCACAACCACGTAGTCACG 106297
| || | || || | | ||||| ||| ||| ||||| || || |||||| |||
Sbjct 162 GGCTTGTAGCCCTTGGCGAGCATTTCTTCAGTG-GTTGCGCCGACGACCACGCGGTCGAT 104
Query 106298 GTCGTGGACTTCACGGCCCAGCAAACCGTCACGTACTGCGCCACCTAC 106345
|||| ||| || ||| |||| || ||||| || ||||| || ||
Sbjct 103 GTCGGTGACCTCGATGCCGAGCAGACGATCACGCACCGCGCCGCCGAC 56
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 454408459309800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |