Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027351.1 Length=147745 Score E Sequences producing significant alignments: (Bits) Value seq134695 96.9 3e-15 seq3046662 93.3 4e-14 seq302243 93.3 4e-14 >seq134695 Length=2551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 197/286 (69%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 106065 GCCATCGCATTAATAGTCAGATCCCGACGAGACAGGTCTTCTGCCAGTGTTACATCAGGG 106124 ||||| || || || ||||| || || ||| |||||||||| |||| || || || ||| Sbjct 552 GCCATGGCGTTGATGGTCAGGTCGCGGCGAATCAGGTCTTCTTCCAGCGTGACCTCGGGG 493 Query 106125 CTGAA---AAAGGTCTCAAAACCTTTGTGACCGCTTCCAACCTTACGTTCAGTTCGAGCG 106181 ||| ||| | |||| || | ||| | || ||| ||||| || || ||| Sbjct 492 CTGGCGTGAAA---CACAAAGCCGCCATAACCCCGACCGCTCTTGCGTTCGGTGCGGGCG 436 Query 106182 AGCGCGTATTCTTCCTTGGTCTCCGGATGGAGGTATACCGGGAAGGAAGCGCCAACCTGG 106241 || |||||||| || ||| || | ||| ||||||||||| |||||| || ||| Sbjct 435 AGGGCGTATTCATCGCCATTCTTTGGGTCCAGGAATACCGGGAAGTCAGCGCCGAC-TGG 377 Query 106242 ATGA-ACCCTTTTTCAATCATTTGTTC-GTGTGTTGCACCCACAACCACGTAGTCACGGT 106299 | | | ||||| | | ||||| ||| ||| || || |||||||| ||| ||| | Sbjct 376 CTTATAGCCTTTGGCGAGCATTTCTTCAGTG-GTCGCGCCCACAACGACGCGGTCGATAT 318 Query 106300 CGTGGACTTCACGGCCCAGCAAACCGTCACGTACTGCGCCACCTAC 106345 || ||| | | |||| |||| | ||||||||||| || || || Sbjct 317 CGGTGACCTTAAGGCCAAGCAGGCGATCACGTACTGCACCGCCGAC 272 >seq3046662 Length=1096 Score = 93.3 bits (102), Expect = 4e-14 Identities = 198/292 (68%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 106058 ATCCTGAGCCATCGCATTAATAGTCAGATCCCGACGAGACAGGTCTTCTGCCAGTGTTAC 106117 ||||| ||||| || || || ||||| || || ||| |||||| ||| |||| || || Sbjct 343 ATCCTCGGCCATGGCGTTGATGGTCAGGTCACGGCGAATCAGGTCCTCTTCCAGCGTCAC 284 Query 106118 ATCAGGGCTGAA---AAAGGTCTCAAAACCTTTGTGACCGCTTCCAACCTTACGTTCAGT 106174 || |||||| ||| | |||| || || ||| | || ||| ||||| || Sbjct 283 CTCGGGGCTGGCGTGAAA---CACAAAGCCGCCGTAACCCCGACCGCTCTTGCGTTCGGT 227 Query 106175 TCGAGCGAGCGCGTATTCTTCCTTGGTCTCCGGATGGAGGTATACCGGGAAGGAAGCGCC 106234 || ||||| |||||||| || | ||| || | ||| ||||||||||| |||||| Sbjct 226 GCGGGCGAGGGCGTATTCGTCGCCGTTCTTGGGGTCCAGGAATACCGGGAAGTCAGCGCC 167 Query 106235 AACCTGGATGAACCCTTTTTCAATCATTTGTTC-GTGTGTTGCACCCACAACCACGTAGT 106293 || | || | ||||| | | ||||||||| ||| || ||||| || || ||| || Sbjct 166 GACTGGCTTGTAGCCTTTGGCGAGCATTTGTTCAGTG-GTCGCACCGACCACAACGCGGT 108 Query 106294 CACGGTCGTGGACTTCACGGCCCAGCAAACCGTCACGTACTGCGCCACCTAC 106345 | ||| ||| | |||| |||| | ||||| || || || || || Sbjct 107 CGATATCGGTGACCTTGAGGCCGAGCAGGCGATCACGCACCGCACCGCCGAC 56 >seq302243 Length=1145 Score = 93.3 bits (102), Expect = 4e-14 Identities = 195/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 106059 TCCTGAGCCATCGCATTAATAGTCAGATCCCGACGAGACAGGTCTTCTGCCAGTGTTACA 106118 |||| ||||| || || || ||||| || |||||| |||||||||| |||| || || Sbjct 342 TCCTCCGCCATGGCGTTGATGGTCAGGTCGCGACGAATCAGGTCTTCTTCCAGCGTGACC 283 Query 106119 TCAGGGCTGAAAAAGGTCTCAAAACCTTTGTGACCGCTTCCAACCTTACGTTCAGTTCGA 106178 || |||||| | | |||| || | ||| | ||| ||| || || || || Sbjct 282 TCGGGGCTGGCATGAAACACAAAGCCGCCATAACCCCGGCCACTCTTGCGCTCGGTGCGG 223 Query 106179 GCGAGCGCGTATTCTTCCTTGGTCTCCGGATGGAGGTATACCGGGAAGGAAGCGCCAACC 106238 || || ||||| || || | | | ||| ||| ||||||||||| ||| || ||| Sbjct 222 GCCAGGGCGTACTCATCGCCGTTTTTCGGGGCCAGGAATACCGGGAAGTCAGCACCCACC 163 Query 106239 TGGATGAACCCTTTTTCAATCATTTGTTC-GTGTGTTGCACCCACAACCACGTAGTCACG 106297 | || | || || | | ||||| ||| ||| ||||| || || |||||| ||| Sbjct 162 GGCTTGTAGCCCTTGGCGAGCATTTCTTCAGTG-GTTGCGCCGACGACCACGCGGTCGAT 104 Query 106298 GTCGTGGACTTCACGGCCCAGCAAACCGTCACGTACTGCGCCACCTAC 106345 |||| ||| || ||| |||| || ||||| || ||||| || || Sbjct 103 GTCGGTGACCTCGATGCCGAGCAGACGATCACGCACCGCGCCGCCGAC 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454408459309800