Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027368.1 Length=33828 Score E Sequences producing significant alignments: (Bits) Value seq3063309 174 3e-39 seq3088503 113 9e-21 >seq3063309 Length=1409 Score = 174 bits (192), Expect = 3e-39 Identities = 310/448 (69%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 15426 TTCTTGCGTCGTTCGCTGCCATCGCGCCATTTGTCCCCAGTCCAGAACGGGTAAGCGGGG 15485 ||||||| || | |||| | ||| ||| || || | |||||||||||| || || Sbjct 445 TTCTTGCCGCGCTTGCTG---TTGCGGAATTCCTCGCCCGACCAGAACGGGTACGCTTGG 389 Query 15486 TGC-ATTTTG-GTTGAAGGGGTGGAAAAGTACGTCTTGCGCCACTTCTTATGCGTGGCCA 15543 ||| | || | || || || |||||||| || |||||||||||||| || ||| ||| Sbjct 388 TGCGAGACTGCGCTG--GGCGTCGAAAAGTAGGTTTTGCGCCACTTCTTGTGGGTGCCCA 331 Query 15544 TCGCTGAGGCGACTTTGTTCAGCTCGTCAAACTTGCCGATCCAGAAATACTCATCCACAT 15603 | || ||| || || | || | ||| || | | ||||| ||||||||||| || | Sbjct 330 TGGCACTGGCCACGGTGCTGAGTTTGTCGAAGTCACGTATCCAAAAATACTCATCGACGT 271 Query 15604 ACACATGGCCGTGGTAACTCTGCGCTGTTTTGCCATTGGTAGACAGGAAATGCAGCTCAG 15663 | || ||||| ||||| | ||| || || ||| |||||| |||| |||| ||||||| | Sbjct 270 AGACGTGGCCATGGTAGCCCTGGGCGGTGCTGCTATTGGTCGACAAGAAACGCAGCTCGG 211 Query 15664 CGCCATTAGAAAGCGTCATCGGGTTGCCGGAAAGTTCCAGCCCCAAAAACTCTTTGGCGA 15723 |||| || ||||| ||||||||||||| || || | | || ||| || || | Sbjct 210 CGCCGTTGCTGAGCGTGATCGGGTTGCCGGTCAGCTCGATGTCGAACCACTGCTTTGCAA 151 Query 15724 GCGAAACAATATAGCGGCGGAACACTTCGGCCTGAGCGCGTGAAGCAGAGAGGAAAATCT 15783 | | || || | |||||| | ||| | ||| | ||| || || ||||| | || Sbjct 150 ACTGGATGATGTAACTGCGGAAAATTTCCGACTGCGAGCGGCTGGCCGACAGGAACACCT 91 Query 15784 GGTTGTCGCCAGTGAGAATCGCATTCTCTAGCGCTTCGCCACTGAAATAGTAAGTTGCCC 15843 |||||||||| || || | || | | | ||||||||| ||| ||||| || | Sbjct 90 GGTTGTCGCCGGTCAGCACGGCGTCCATGAACGCTTCGCCGGCGAAGTAGTACGTCAGGC 31 Query 15844 CTACTTGGCGCGATTTAAGAATGTTTCG 15871 | || ||||| ||| || ||||| || Sbjct 30 CCACCTGGCGGCTTTTCAGGATGTTGCG 3 >seq3088503 Length=21467 Score = 113 bits (124), Expect = 9e-21 Identities = 422/652 (65%), Gaps = 20/652 (3%) Strand=Plus/Minus Query 15032 CTCAAGTACACGGAACTTTTCCGCT-GCCACAATTGGCGGGGCAACCACCATCAGCACTG 15090 ||| || || ||||| ||| |||| | || | ||||| |||||||||| |||| | | Sbjct 11099 CTCCAGGACGCGGAA-TTTGCCGCCCGGTACCAGCGGCGGCGCAACCACCACCAGCCCGG 11041 Query 15091 CATTGTCTCGCGTTCGCGATGGGTCATAGCCCAGCCAAACTTCACGGTTGCCAAATGGTC 15150 || | ||| || |||||| ||||| | ||| || | ||||| || || || | Sbjct 11040 AGCAATCACCGGTTTCCGCTGGGTCGTAGCCGATCCATACCTGACGGTCACCGAACGGCC 10981 Query 15151 GCTCTGCGCTTGGCGAGTAATCCT--GCCAAATTGCCGTA----TCGACCATGCATTTCT 15204 || ||| |||| ||| |||| ||| | | | | ||||||||||| ||| Sbjct 10980 GCATGGCGAATGGCTTGTAGTCCTCTGCCCATTCAACCCAACTGTCGACCATGCAGCTCT 10921 Query 15205 GAATCTTGTTAAACTCAAATATCGAGCTGGCACCATC---AACAAAGATGCACATAAACA 15261 | | | ||| ||| || |||||| ||||| |||||| ||||| |||| Sbjct 10920 GCAGCAACGCCAACGGAAAGAT---GCTGGCTCCATCGTCAACAAACTCACACATCAACA 10864 Query 15262 AGTTGTTGAAATCGGTTTCGTTGTACTCTTCGCGCAGCTCGTCGATGTCGAACAGGTCAC 15321 |||| ||| | | ||||||| |||| ||| || ||||||||||| |||| Sbjct 10863 GGTTGGCGAACGCCTCAGGGCTGTACTCCCGACGCAACTCCTCAATGTCGAACAGATCAC 10804 Query 15322 AGCCACCCTTGGCGGCATCTTCAATCGTGACCACATAACGCCACTGCTTATCCGGGCAAA 15381 |||| || | | || || || ||||| | | |||||| | ||| ||| | Sbjct 10803 AGCCGCCGTGCTCTGCGTCCAGGATGGTGACGATCTGCCGCCACAACCGGTCCTCGCAGA 10744 Query 15382 GGCGACCGCCATCGCGCAGTTCATC--AAACGTTGGGAACTCGATGTTCTTGCGTCGTTC 15439 || || | | || | | |||||| | | || | ||| ||||| || | Sbjct 10743 ACCGCCCCTGTTGGAGCGCCCCGTGGGAAACGTCG--ACCTTGGTGTG-TTGCGCCGCTG 10687 Query 15440 GCTG-CCATCGCGCCATTTGTCCCCAGTCCAGAACGGGTAAGCGGGGTGCATTTTGGTTG 15498 ||| || | | | || || |||||||| | ||| || || || | | Sbjct 10686 GCTTACCCTTGTTGAAGCGCTCGCCGGTCCAGAAGGTGTAGGCCTCATGGGCCATGCTGG 10627 Query 15499 AAGGGGTGGAAAAGTACGTCTTGCGCCACTTCTTATGCGTGGCCATCGCTGAGGCGACTT 15558 | || || || ||||| || |||||||||||||| ||| ||||||| | || ||||| | Sbjct 10626 ACGGCGTCGAGAAGTAGGTTTTGCGCCACTTCTTGTGCATGGCCATGCCCGAAGCGACCT 10567 Query 15559 TGTTCAGCTCGTCAAACTTGCCGATCCAGAAATACTCATCCACATACACATGGCCGTGGT 15618 ||||||| || ||||||||| ||||||| | || || | || | || |||||||| Sbjct 10566 TGTTCAGTTCCTCAAACTTGAACGTCCAGAAGAATTCGTCGAAGTAGAAATTGCCGTGGT 10507 Query 15619 AACTCTGCGCTGTTTTGCCATTGGTAGACAGGAAATGCAGCTCAGCGCCATT 15670 | | ||| || || |||||||| |||||| |||||| ||||| || Sbjct 10506 AGCCCTGGGCGGTACGCGCATTGGTACCGAGGAAAAACAGCTCGGCGCCGTT 10455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104162290105780