Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_027383.1
Length=44613
Score E
Sequences producing significant alignments: (Bits) Value
seq3088451 100 8e-17
seq2800887 80.6 7e-11
>seq3088451
Length=13260
Score = 100 bits (110), Expect = 8e-17
Identities = 216/321 (67%), Gaps = 8/321 (2%)
Strand=Plus/Minus
Query 12870 ACCAACTGATCGCAGCGCTGCGCAATCTGGTAGAGCGCGTACCGGTTTAACATTTGCGGT 12929
|||||||| ||||| ||| || || |||| ||| | || || | ||| |||
Sbjct 12148 ACCAACTGGTCGCAATACTGTGCGATTCGGTAAAGCTCCCACTTGTCCACCATCCACGGC 12089
Query 12930 TTGATACGCCGACCGAGGCCGAAGCGCTCAGTAATACAAATATCGTACCAGTGCCACGCA 12989
||||| || || || || || || || || | || || |||| | ||| ||
Sbjct 12088 TTGATGCGGCGGCCCAGACCAAAACGGTCTTGGGTGCAGATGCCGTAGGTGATCCAGGCC 12029
Query 12990 GGGTTATCCGTCCATGCGCGTTTAAACGTGCCGTCCCAGTCCCCGGAATAGGTATGATTA 13049
||||||| ||||| || ||| | |||||||||||| | ||||| ||||| |
Sbjct 12028 GGGTTATTGGTCCAGGCCTCTTTCATGGTGCCGTCCCAGGCGCCGGAGTAGGTGCGGGCC 11969
Query 13050 ATCGGGTCGTAGTTGTTCGGTATTAGA-ACTTTACGGC---CTTTGCACTTGATGGACAC 13105
| ||| ||||||||| |||| | | || |||| | || ||||| | || |||
Sbjct 11968 ACCGGATCGTAGTTGCTCGGCACCTGCCAC----CGGCGCGCCTTACACTTCACGGTCAC 11913
Query 13106 GCGCGGGATGTTCTGGAACGCTTTGGCGTCGAACTCCACAAACAACAGCGCGGTTAGCGG 13165
| ||| |||||| |||| | |||||||||||| || |||| ||||||||| ||
Sbjct 11912 GGCCGGAATGTTCGTGAACTGCTCGGCGTCGAACTCGACGAACAGCAGCGCGGTGTTTGG 11853
Query 13166 GTAACGCAGGCGGGCGTCGAT 13186
||| ||||| ||||||||
Sbjct 11852 GTAGCGCAGCTTTGCGTCGAT 11832
>seq2800887
Length=235
Score = 80.6 bits (88), Expect = 7e-11
Identities = 97/132 (73%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 29984 GACGTTAAAGTCCATACCGATAATCAGCGTGTCGTCCGGCTGCACTTCTTCGGTGCTGGC 30043
|||||| |||||||||||||| | ||||| ||| | |||||||| ||| || |
Sbjct 229 GACGTTGAAGTCCATACCGATGAACAGCGGCTCGCCGGGCTGCACGGTGTCGAAGCACCC 170
Query 30044 GTTCTCCTCGCGGTTGAACATCTTGTACACCGCGCCCGACGTAAGGTTAACAAACAGGCC 30103
||| || ||||| | | | |||| | || |||||||||||||| || ||| ||||
Sbjct 169 GTTGAGCTTGCGGTCGTAAGCCGTGTAAATCGTTCCCGACGTAAGGTTGACGAACTGGCC 110
Query 30104 GTTCAGGTACGC 30115
|| ||||||||
Sbjct 109 CTTGAGGTACGC 98
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137408525642650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |