Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027383.1 Length=44613 Score E Sequences producing significant alignments: (Bits) Value seq3088451 100 8e-17 seq2800887 80.6 7e-11 >seq3088451 Length=13260 Score = 100 bits (110), Expect = 8e-17 Identities = 216/321 (67%), Gaps = 8/321 (2%) Strand=Plus/Minus Query 12870 ACCAACTGATCGCAGCGCTGCGCAATCTGGTAGAGCGCGTACCGGTTTAACATTTGCGGT 12929 |||||||| ||||| ||| || || |||| ||| | || || | ||| ||| Sbjct 12148 ACCAACTGGTCGCAATACTGTGCGATTCGGTAAAGCTCCCACTTGTCCACCATCCACGGC 12089 Query 12930 TTGATACGCCGACCGAGGCCGAAGCGCTCAGTAATACAAATATCGTACCAGTGCCACGCA 12989 ||||| || || || || || || || || | || || |||| | ||| || Sbjct 12088 TTGATGCGGCGGCCCAGACCAAAACGGTCTTGGGTGCAGATGCCGTAGGTGATCCAGGCC 12029 Query 12990 GGGTTATCCGTCCATGCGCGTTTAAACGTGCCGTCCCAGTCCCCGGAATAGGTATGATTA 13049 ||||||| ||||| || ||| | |||||||||||| | ||||| ||||| | Sbjct 12028 GGGTTATTGGTCCAGGCCTCTTTCATGGTGCCGTCCCAGGCGCCGGAGTAGGTGCGGGCC 11969 Query 13050 ATCGGGTCGTAGTTGTTCGGTATTAGA-ACTTTACGGC---CTTTGCACTTGATGGACAC 13105 | ||| ||||||||| |||| | | || |||| | || ||||| | || ||| Sbjct 11968 ACCGGATCGTAGTTGCTCGGCACCTGCCAC----CGGCGCGCCTTACACTTCACGGTCAC 11913 Query 13106 GCGCGGGATGTTCTGGAACGCTTTGGCGTCGAACTCCACAAACAACAGCGCGGTTAGCGG 13165 | ||| |||||| |||| | |||||||||||| || |||| ||||||||| || Sbjct 11912 GGCCGGAATGTTCGTGAACTGCTCGGCGTCGAACTCGACGAACAGCAGCGCGGTGTTTGG 11853 Query 13166 GTAACGCAGGCGGGCGTCGAT 13186 ||| ||||| |||||||| Sbjct 11852 GTAGCGCAGCTTTGCGTCGAT 11832 >seq2800887 Length=235 Score = 80.6 bits (88), Expect = 7e-11 Identities = 97/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 29984 GACGTTAAAGTCCATACCGATAATCAGCGTGTCGTCCGGCTGCACTTCTTCGGTGCTGGC 30043 |||||| |||||||||||||| | ||||| ||| | |||||||| ||| || | Sbjct 229 GACGTTGAAGTCCATACCGATGAACAGCGGCTCGCCGGGCTGCACGGTGTCGAAGCACCC 170 Query 30044 GTTCTCCTCGCGGTTGAACATCTTGTACACCGCGCCCGACGTAAGGTTAACAAACAGGCC 30103 ||| || ||||| | | | |||| | || |||||||||||||| || ||| |||| Sbjct 169 GTTGAGCTTGCGGTCGTAAGCCGTGTAAATCGTTCCCGACGTAAGGTTGACGAACTGGCC 110 Query 30104 GTTCAGGTACGC 30115 || |||||||| Sbjct 109 CTTGAGGTACGC 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137408525642650