Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027384.1 Length=37359 Score E Sequences producing significant alignments: (Bits) Value seq3084660 138 3e-28 seq3087822 123 6e-24 seq3088451 96.9 8e-16 >seq3084660 Length=3030 Score = 138 bits (152), Expect = 3e-28 Identities = 135/170 (79%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 26120 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26179 ||||||||||||||||||||||||| || || ||||| |||||||| |||||||||| Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141 Query 26180 CCGACGAACCAGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 26238 | ||||| || ||||| || || || | ||| |||||| | || ||||||||||| ||| Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCC 2082 Query 26239 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAACAAGGCGAT-TCGCTGG 26287 ||||||||| ||| || | || || || | ||||||||| |||||| Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCTGG 2032 >seq3087822 Length=6084 Score = 123 bits (136), Expect = 6e-24 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 26120 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26179 |||||||||| || ||||||||||| || || |||||||| ||||||||||| |||| Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183 Query 26180 CCGACGAACCAGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 26238 | ||||| || ||||| || || || | ||| || ||| |||| || |||||||| ||| Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCC 5124 Query 26239 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAACAAGGCGAT 26280 |||||||| ||| || | || || || ||||||||| || Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAAT 5082 >seq3088451 Length=13260 Score = 96.9 bits (106), Expect = 8e-16 Identities = 177/252 (70%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 26969 GAAACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTGCTGA-GCTATGCGGAC 27027 |||||||| || || | || ||||||||||| || ||| || | ||| | ||||| Sbjct 7374 GAAACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGAC 7432 Query 27028 TATGTCGCGCAACGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTA 27086 || | |||||| | ||| | |||||| |||| | |||||| | || || || || || Sbjct 7433 TACGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTA 7491 Query 27087 TGAGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCC 27144 ||| || ||| | || ||||||||| | || | |||| ||| ||| |||| Sbjct 7492 CCAGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCT 7549 Query 27145 CAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCGCAG 27204 ||| | ||| |||||||| ||||||||||| || || | ||||||||||| ||| Sbjct 7550 CAGAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAG 7609 Query 27205 AAGAAGGCCGAC 27216 ||| | || ||| Sbjct 7610 AAGGATGCTGAC 7621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115047079876822