Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_027384.1
Length=37359
Score E
Sequences producing significant alignments: (Bits) Value
seq3084660 138 3e-28
seq3087822 123 6e-24
seq3088451 96.9 8e-16
>seq3084660
Length=3030
Score = 138 bits (152), Expect = 3e-28
Identities = 135/170 (79%), Gaps = 3/170 (2%)
Strand=Plus/Minus
Query 26120 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26179
||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||
Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141
Query 26180 CCGACGAACCAGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 26238
| ||||| || ||||| || || || | ||| |||||| | || ||||||||||| |||
Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCC 2082
Query 26239 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAACAAGGCGAT-TCGCTGG 26287
||||||||| ||| || | || || || | ||||||||| ||||||
Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCTGG 2032
>seq3087822
Length=6084
Score = 123 bits (136), Expect = 6e-24
Identities = 126/162 (78%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 26120 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26179
|||||||||| || ||||||||||| || || |||||||| ||||||||||| ||||
Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183
Query 26180 CCGACGAACCAGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 26238
| ||||| || ||||| || || || | ||| || ||| |||| || |||||||| |||
Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCC 5124
Query 26239 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAACAAGGCGAT 26280
|||||||| ||| || | || || || ||||||||| ||
Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAAT 5082
>seq3088451
Length=13260
Score = 96.9 bits (106), Expect = 8e-16
Identities = 177/252 (70%), Gaps = 8/252 (3%)
Strand=Plus/Plus
Query 26969 GAAACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTGCTGA-GCTATGCGGAC 27027
|||||||| || || | || ||||||||||| || ||| || | ||| | |||||
Sbjct 7374 GAAACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGAC 7432
Query 27028 TATGTCGCGCAACGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTA 27086
|| | |||||| | ||| | |||||| |||| | |||||| | || || || || ||
Sbjct 7433 TACGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTA 7491
Query 27087 TGAGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCC 27144
||| || ||| | || ||||||||| | || | |||| ||| ||| ||||
Sbjct 7492 CCAGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCT 7549
Query 27145 CAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCGCAG 27204
||| | ||| |||||||| ||||||||||| || || | ||||||||||| |||
Sbjct 7550 CAGAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAG 7609
Query 27205 AAGAAGGCCGAC 27216
||| | || |||
Sbjct 7610 AAGGATGCTGAC 7621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 115047079876822
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |