Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 129 4e-25
seq85459 120 2e-22
seq2306809 105 5e-18
seq141641 102 6e-17
seq1495313 96.9 3e-15
seq2585192 91.5 1e-13
seq147400 91.5 1e-13
seq116363 87.8 1e-12
seq332822 86.0 5e-12
seq373702 82.4 6e-11
>seq28392
Length=738
Score = 129 bits (142), Expect = 4e-25
Identities = 271/399 (68%), Gaps = 5/399 (1%)
Strand=Plus/Minus
Query 44150 GTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209
||||||||||| |||||||| || || |||||| | ||||| ||| | |||||||||||
Sbjct 395 GTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGAAACGAGGA 336
Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269
|||||||||| | |||||||| | ||| | || || | ||||| || || || ||
Sbjct 335 CTGATGCCTGGCCTCACGTTTTCCAGTGAACTTATTAGCAGAGATGAGGGTTTGCACTGT 276
Query 44270 GATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATT 44329
|| ||||| ||| | | | | | || | | | || ||||| ||| | |
Sbjct 275 GACTTTGCCTGCCTTATGTTCAAACACCT-GTTG--CACAAACCTTCGGAACAGAGAGTA 219
Query 44330 ACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCT 44389
| ||| || | || | ||||| | ||||||||| || || | || || | |||
Sbjct 218 AAAGAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCCT 159
Query 44390 GTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGA 44448
|| || | || || ||||| || || ||||||||| || || || || | | | |||||
Sbjct 158 GTGAAGCTCATTGGGATGAAGTGCAC-TTTGATGAAGCAGTACATCGAGTTCGTGGCAGA 100
Query 44449 TCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTT 44508
| | | | |||| ||||| | || | | ||| |||| || ||||| ||
Sbjct 99 TAGACTTATGCTGGAGCTGGGCTTTAGCAAGGTTTGCAGAGTAGAAAATCCATTTGACTT 40
Query 44509 TATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTT 44547
||||||||||||||| |||| || || || ||||| ||
Sbjct 39 TATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTT 1
>seq85459
Length=10496
Score = 120 bits (132), Expect = 2e-22
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||||| ||||| |||||||| ||||| || ||||||||
Sbjct 6744 CGGTTTAGCCAAGAAGTTCAGATTACC-GAAGCCCGATGTTTCTATGGCTTCCAAATTGC 6802
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| |||||||| ||||| || || ||||| ||||| ||||||
Sbjct 6803 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGATACTTACATTAAAGAT 6860
Score = 96.9 bits (106), Expect = 3e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|||||||| | || || ||||| | ||||||||||| |||||||| || || |||||
Sbjct 8821 GGAGAACGTGTGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 8880
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238
| ||||| ||| | ||||||||||| | |||||||| | |||||||| |||||
Sbjct 8881 TCGATATTCTGGCTCAAGAAACGAGGACTAATGCCTGGTCTCACGTTTTCCAATGA 8936
>seq2306809
Length=138
Score = 105 bits (116), Expect = 5e-18
Identities = 107/137 (78%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895
||||||| || || |||| || ||||| || || || || ||||| ||||||||||
Sbjct 138 ATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATT 79
Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTT 43954
|||| |||||| ||||||||||| |||||| ||||| || ||||| ||||| ||
Sbjct 78 TGGTGGAGCGGTTTTGCCAAGAAGTTCAGATTACC-GAAGCCCGTTGTTTCTATGGCTTC 20
Query 43955 CAAATTGCCATAGAAAA 43971
||||||||||| |||||
Sbjct 19 CAAATTGCCATGGAAAA 3
>seq141641
Length=332
Score = 102 bits (112), Expect = 6e-17
Identities = 154/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743
||||||||| | |||||| | ||||| ||| |||| ||||| || ||||| |||||
Sbjct 118 AGAAAATCCCCGCCGCTTTGTCATCTTTCCTATTAAATACCATGATATTTGGCAGATGTA 177
Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTA 43801
|| ||||| |||| || ||||||||||| || || || || | | || ||| | |
Sbjct 178 TAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCA 237
Query 43802 GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861
|||| ||| || | || || | || | | ||||||| || || |||| ||
Sbjct 238 GCAC--TGGGAAGCCCTGAAGCCTGAGGAGAGAGATTTTATTTCCCATGTGCTGGCTTTC 295
Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG 43898
||||| || || || || ||||| |||||||||||||
Sbjct 296 TTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGG 332
>seq1495313
Length=124
Score = 96.9 bits (106), Expect = 3e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 41151 CCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTA 41210
|| || ||||| || || ||||| |||||||| || |||||||||||| | || | |
Sbjct 1 CCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACACATCACGGACCTG 60
Query 41211 AAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAG 41270
|| || ||||| ||||| ||||| | ||||||| ||| ||||| | |||||||| |||
Sbjct 61 AAGCCAGGTGACTTTGTACACACTCTGGGAGATGCACACGTTTACCTGAATCACATCGAG 120
Query 41271 CCG 41273
|||
Sbjct 121 CCG 123
>seq2585192
Length=178
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135
|| ||||| ||||| ||||| || ||||| || || ||||| || | || || |||
Sbjct 138 TGCCAGTTCTACGTGGTGAATGGGGAGCTGTCCTGCCAGTTGTACCAGCGGTCGGGAGAC 79
Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195
||||| || || || || || ||||| || || ||||| |||||||| || |||||||||
Sbjct 78 ATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCA 19
Query 41196 CAC 41198
|||
Sbjct 18 CAC 16
>seq147400
Length=24452
Score = 91.5 bits (100), Expect = 1e-13
Identities = 117/162 (72%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| ||||||||| || || | |||||| | || || ||||| ||||| |||||
Sbjct 17459 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 17518
Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
||||| | || || ||||||||||||||||| || || ||||| ||| |
Sbjct 17519 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 17578
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
|| || || | |||||||| || || ||||| ||||| |||
Sbjct 17579 GATGGCGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 17620
>seq116363
Length=44347
Score = 87.8 bits (96), Expect = 1e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135
|| ||||| ||||| ||||| || ||||| || || ||||| || | | || |||
Sbjct 21576 TGCCAGTTCTACGTGGAGAATGGGGAGCTGTCCTGCCAGTTGTACCAGCGGCCGGGAGAC 21635
Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195
||||| || || || || || ||||| || || ||||| |||||||| || |||||||||
Sbjct 21636 ATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCA 21695
Query 41196 CAC 41198
|||
Sbjct 21696 CAC 21698
>seq332822
Length=31618
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| |
Sbjct 5131 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 5190
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 5191 AACGAGTTTCAGAGTATCAGCG 5212
>seq373702
Length=5363
Score = 82.4 bits (90), Expect = 6e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | |||||||| || || | |||||| ||| ||||||| ||| | ||||||||
Sbjct 1617 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 1676
Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782
|| || |||||||||||||| ||
Sbjct 1677 TCCTTCTGGACAGCAGAAGAGGT 1699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 382495268158555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |