Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq28392 129 4e-25 seq85459 120 2e-22 seq2306809 105 5e-18 seq141641 102 6e-17 seq1495313 96.9 3e-15 seq2585192 91.5 1e-13 seq147400 91.5 1e-13 seq116363 87.8 1e-12 seq332822 86.0 5e-12 seq373702 82.4 6e-11 >seq28392 Length=738 Score = 129 bits (142), Expect = 4e-25 Identities = 271/399 (68%), Gaps = 5/399 (1%) Strand=Plus/Minus Query 44150 GTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 ||||||||||| |||||||| || || |||||| | ||||| ||| | ||||||||||| Sbjct 395 GTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGAAACGAGGA 336 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 |||||||||| | |||||||| | ||| | || || | ||||| || || || || Sbjct 335 CTGATGCCTGGCCTCACGTTTTCCAGTGAACTTATTAGCAGAGATGAGGGTTTGCACTGT 276 Query 44270 GATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATT 44329 || ||||| ||| | | | | | || | | | || ||||| ||| | | Sbjct 275 GACTTTGCCTGCCTTATGTTCAAACACCT-GTTG--CACAAACCTTCGGAACAGAGAGTA 219 Query 44330 ACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCT 44389 | ||| || | || | ||||| | ||||||||| || || | || || | ||| Sbjct 218 AAAGAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCCT 159 Query 44390 GTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGA 44448 || || | || || ||||| || || ||||||||| || || || || | | | ||||| Sbjct 158 GTGAAGCTCATTGGGATGAAGTGCAC-TTTGATGAAGCAGTACATCGAGTTCGTGGCAGA 100 Query 44449 TCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTT 44508 | | | | |||| ||||| | || | | ||| |||| || ||||| || Sbjct 99 TAGACTTATGCTGGAGCTGGGCTTTAGCAAGGTTTGCAGAGTAGAAAATCCATTTGACTT 40 Query 44509 TATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTT 44547 ||||||||||||||| |||| || || || ||||| || Sbjct 39 TATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTT 1 >seq85459 Length=10496 Score = 120 bits (132), Expect = 2e-22 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| ||||| |||||||| ||||| || |||||||| Sbjct 6744 CGGTTTAGCCAAGAAGTTCAGATTACC-GAAGCCCGATGTTTCTATGGCTTCCAAATTGC 6802 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || ||||| ||||| |||||| Sbjct 6803 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGATACTTACATTAAAGAT 6860 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 8821 GGAGAACGTGTGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 8880 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||| ||| | ||||||||||| | |||||||| | |||||||| ||||| Sbjct 8881 TCGATATTCTGGCTCAAGAAACGAGGACTAATGCCTGGTCTCACGTTTTCCAATGA 8936 >seq2306809 Length=138 Score = 105 bits (116), Expect = 5e-18 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895 ||||||| || || |||| || ||||| || || || || ||||| |||||||||| Sbjct 138 ATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATT 79 Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 |||| |||||| ||||||||||| |||||| ||||| || ||||| ||||| || Sbjct 78 TGGTGGAGCGGTTTTGCCAAGAAGTTCAGATTACC-GAAGCCCGTTGTTTCTATGGCTTC 20 Query 43955 CAAATTGCCATAGAAAA 43971 ||||||||||| ||||| Sbjct 19 CAAATTGCCATGGAAAA 3 >seq141641 Length=332 Score = 102 bits (112), Expect = 6e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| | |||||| | ||||| ||| |||| ||||| || ||||| ||||| Sbjct 118 AGAAAATCCCCGCCGCTTTGTCATCTTTCCTATTAAATACCATGATATTTGGCAGATGTA 177 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTA 43801 || ||||| |||| || ||||||||||| || || || || | | || ||| | | Sbjct 178 TAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCA 237 Query 43802 GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861 |||| ||| || | || || | || | | ||||||| || || |||| || Sbjct 238 GCAC--TGGGAAGCCCTGAAGCCTGAGGAGAGAGATTTTATTTCCCATGTGCTGGCTTTC 295 Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG 43898 ||||| || || || || ||||| ||||||||||||| Sbjct 296 TTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGG 332 >seq1495313 Length=124 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41151 CCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTA 41210 || || ||||| || || ||||| |||||||| || |||||||||||| | || | | Sbjct 1 CCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACACATCACGGACCTG 60 Query 41211 AAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAG 41270 || || ||||| ||||| ||||| | ||||||| ||| ||||| | |||||||| ||| Sbjct 61 AAGCCAGGTGACTTTGTACACACTCTGGGAGATGCACACGTTTACCTGAATCACATCGAG 120 Query 41271 CCG 41273 ||| Sbjct 121 CCG 123 >seq2585192 Length=178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || ||||| ||||| ||||| || ||||| || || ||||| || | || || ||| Sbjct 138 TGCCAGTTCTACGTGGTGAATGGGGAGCTGTCCTGCCAGTTGTACCAGCGGTCGGGAGAC 79 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 ||||| || || || || || ||||| || || ||||| |||||||| || ||||||||| Sbjct 78 ATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCA 19 Query 41196 CAC 41198 ||| Sbjct 18 CAC 16 >seq147400 Length=24452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 17459 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 17518 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | || || ||||||||||||||||| || || ||||| ||| | Sbjct 17519 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 17578 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 17579 GATGGCGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 17620 >seq116363 Length=44347 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || ||||| ||||| ||||| || ||||| || || ||||| || | | || ||| Sbjct 21576 TGCCAGTTCTACGTGGAGAATGGGGAGCTGTCCTGCCAGTTGTACCAGCGGCCGGGAGAC 21635 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 ||||| || || || || || ||||| || || ||||| |||||||| || ||||||||| Sbjct 21636 ATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCA 21695 Query 41196 CAC 41198 ||| Sbjct 21696 CAC 21698 >seq332822 Length=31618 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 5131 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 5190 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 5191 AACGAGTTTCAGAGTATCAGCG 5212 >seq373702 Length=5363 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| | |||||||| Sbjct 1617 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 1676 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 1677 TCCTTCTGGACAGCAGAAGAGGT 1699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 382495268158555