Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq277625 109 2e-19 seq3082680 96.9 1e-15 seq3048559 84.2 8e-12 >seq277625 Length=52836 Score = 109 bits (120), Expect = 2e-19 Identities = 182/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 12548 ATGAGCATGAATCTTATGGCTAAGGCCATGAATATAAAGGTTGGCAACCCACTGAGAAAA 12607 ||||||||| |||| |||| ||||||||||| | ||||| || ||||| || | || Sbjct 40875 ATGAGCATGGATCTGATGGTCAAGGCCATGAAAACGAAGGTCGGTAACCCGCTCCGTAAG 40816 Query 12608 CTGGTTCTGATTAAACTTGCCGATAACGCCAATGATAATGGCGAATGCTGGCCTTCATAT 12667 |||| ||| | || | ||||| ||||||| |||| | ||||| |||||||| || || Sbjct 40815 TTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGTAC 40756 Query 12668 CAACATGTCGCTGACCAGTGTGAGGTGAGCAGATCGACAGTAAAAAGTCACATTAGGGCA 12727 || || | || || || |||||| | | | ||||| || || || || | | | Sbjct 40755 CAGCACATTGCCGATCAATGTGAGATCGGTCGCTCGACGGTGAAGTTGCATGTTCGCGAA 40696 Query 12728 CTGGAAGAGATGGGGCTTTTGAAAAGGGAATTCAGAAGAAAAGGAGAGCTTAACCAGTCA 12787 |||||| || ||| || | | || || | | ||||| ||||| || |||||| Sbjct 40695 CTGGAAAAGGCCGGGTTTCTCCGTCGTGAGTTTCGCCGTAAAGGTGAGCTGAATCAGTCA 40636 Query 12788 AACGTTTTTTATCTGACGCTGGA 12810 || | ||| | ||||| || || Sbjct 40635 AATCTCTTTCACCTGACTCTCGA 40613 >seq3082680 Length=2560 Score = 96.9 bits (106), Expect = 1e-15 Identities = 126/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 27930 GCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAAC 27989 |||||||| || |||||||| ||||||||| |||| |||||||| ||||| ||||| Sbjct 1256 GCTGAAAACGATGCTCTGCGTCTCGATGTTGCCACTGGCCGTAAGCGGTTGCGGCTCAAC 1315 Query 27990 GCCACCTGCTCCGGTACCGTGCGTGAAGCCA---CCGGCACCTCCGGCGTGGATAATGCA 28046 ||||||||| || | |||| |||| ||||| || |||||||| | ||||| Sbjct 1316 GCCACCTGCAGCGCCCCAGTGC---CCGCCAGTGCCGGCGCCGGCGGCGTGGCTCATGCA 1372 Query 28047 ACCGGCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCATCCTCAGAGA 28099 | | | || ||| ||| |||| | ||||||||||| ||||||||| Sbjct 1373 AGCACCGCCGAACTCACAGCAGACGCTCGATCGGATTATTTCACCCTCAGAGA 1425 >seq3048559 Length=1123 Score = 84.2 bits (92), Expect = 8e-12 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 12549 TGAGCATGAATCTTATGGCTAAGGCCATGAATATAAAGGTTGGCAACCCACTGAGAAAAC 12608 |||||||| ||||||| || ||||| | || ||||| ||| || | || | Sbjct 344 TGAGCATGGGCCTTATGGTCGCCGCGATGAAGCTTCGTGTCGGCAATCCATTGCGCAAGC 403 Query 12609 TGGTTCTGATTAAACTTGCCGATAACGCCAATGATAATGGCGAATGCTGGCCTTCATATC 12668 | || ||||| || || || || ||||||| || | || || |||||||| || |||| Sbjct 404 TTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATAGGTGAGTGCTGGCCGTCCTATC 463 Query 12669 AACATGTCGCTGACCAGTGTGAGGTGAGCAGATCGA-CAGTAA 12710 | ||||||||||||||||| || | |||| | ||| |||||| Sbjct 464 AGCATGTCGCTGACCAGTGCGAAATCAGCA-AGCGATCAGTAA 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177680089949898