Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_027984.1
Length=57677
Score E
Sequences producing significant alignments: (Bits) Value
seq277625 109 2e-19
seq3082680 96.9 1e-15
seq3048559 84.2 8e-12
>seq277625
Length=52836
Score = 109 bits (120), Expect = 2e-19
Identities = 182/263 (69%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 12548 ATGAGCATGAATCTTATGGCTAAGGCCATGAATATAAAGGTTGGCAACCCACTGAGAAAA 12607
||||||||| |||| |||| ||||||||||| | ||||| || ||||| || | ||
Sbjct 40875 ATGAGCATGGATCTGATGGTCAAGGCCATGAAAACGAAGGTCGGTAACCCGCTCCGTAAG 40816
Query 12608 CTGGTTCTGATTAAACTTGCCGATAACGCCAATGATAATGGCGAATGCTGGCCTTCATAT 12667
|||| ||| | || | ||||| ||||||| |||| | ||||| |||||||| || ||
Sbjct 40815 TTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGTAC 40756
Query 12668 CAACATGTCGCTGACCAGTGTGAGGTGAGCAGATCGACAGTAAAAAGTCACATTAGGGCA 12727
|| || | || || || |||||| | | | ||||| || || || || | | |
Sbjct 40755 CAGCACATTGCCGATCAATGTGAGATCGGTCGCTCGACGGTGAAGTTGCATGTTCGCGAA 40696
Query 12728 CTGGAAGAGATGGGGCTTTTGAAAAGGGAATTCAGAAGAAAAGGAGAGCTTAACCAGTCA 12787
|||||| || ||| || | | || || | | ||||| ||||| || ||||||
Sbjct 40695 CTGGAAAAGGCCGGGTTTCTCCGTCGTGAGTTTCGCCGTAAAGGTGAGCTGAATCAGTCA 40636
Query 12788 AACGTTTTTTATCTGACGCTGGA 12810
|| | ||| | ||||| || ||
Sbjct 40635 AATCTCTTTCACCTGACTCTCGA 40613
>seq3082680
Length=2560
Score = 96.9 bits (106), Expect = 1e-15
Identities = 126/173 (73%), Gaps = 6/173 (3%)
Strand=Plus/Plus
Query 27930 GCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAAC 27989
|||||||| || |||||||| ||||||||| |||| |||||||| ||||| |||||
Sbjct 1256 GCTGAAAACGATGCTCTGCGTCTCGATGTTGCCACTGGCCGTAAGCGGTTGCGGCTCAAC 1315
Query 27990 GCCACCTGCTCCGGTACCGTGCGTGAAGCCA---CCGGCACCTCCGGCGTGGATAATGCA 28046
||||||||| || | |||| |||| ||||| || |||||||| | |||||
Sbjct 1316 GCCACCTGCAGCGCCCCAGTGC---CCGCCAGTGCCGGCGCCGGCGGCGTGGCTCATGCA 1372
Query 28047 ACCGGCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCATCCTCAGAGA 28099
| | | || ||| ||| |||| | ||||||||||| |||||||||
Sbjct 1373 AGCACCGCCGAACTCACAGCAGACGCTCGATCGGATTATTTCACCCTCAGAGA 1425
>seq3048559
Length=1123
Score = 84.2 bits (92), Expect = 8e-12
Identities = 118/163 (72%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 12549 TGAGCATGAATCTTATGGCTAAGGCCATGAATATAAAGGTTGGCAACCCACTGAGAAAAC 12608
|||||||| ||||||| || ||||| | || ||||| ||| || | || |
Sbjct 344 TGAGCATGGGCCTTATGGTCGCCGCGATGAAGCTTCGTGTCGGCAATCCATTGCGCAAGC 403
Query 12609 TGGTTCTGATTAAACTTGCCGATAACGCCAATGATAATGGCGAATGCTGGCCTTCATATC 12668
| || ||||| || || || || ||||||| || | || || |||||||| || ||||
Sbjct 404 TTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATAGGTGAGTGCTGGCCGTCCTATC 463
Query 12669 AACATGTCGCTGACCAGTGTGAGGTGAGCAGATCGA-CAGTAA 12710
| ||||||||||||||||| || | |||| | ||| ||||||
Sbjct 464 AGCATGTCGCTGACCAGTGCGAAATCAGCA-AGCGATCAGTAA 505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 177680089949898
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |