Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_027991.1
Length=147303
Score E
Sequences producing significant alignments: (Bits) Value
seq376597 158 1e-33
seq3043390 149 6e-31
seq2940411 109 5e-19
seq2855069 91.5 1e-13
seq2495394 91.5 1e-13
seq2884197 87.8 2e-12
>seq376597
Length=1212
Score = 158 bits (174), Expect = 1e-33
Identities = 203/276 (74%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136
|||| || || ||||| ||| ||| || || ||||| ||||| |||||||| || |
Sbjct 141 GCACCCTGCAACTGATCCGTGAAGGCGGTTGCAAGGCGGGCCTGGTGTTCAACCCCGCCA 200
Query 58137 CGCCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCG 58196
||||| | || || || ||||| |||||||| | || || || || ||||| ||
Sbjct 201 CGCCGTTGAGCGTGCTGGAGTACGTGATGGACAAGGTCGACATGGTCTTGTTGATGAGCG 260
Query 58197 TGAACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAG 58256
| |||||||||||||| || ||| || ||||| |||||| | || ||||||||||
Sbjct 261 TCAACCCAGGCTTCGGTGGGCAGAAGTTCATTCCCGGTACGCTGAACAAGCTGCGCGAAG 320
Query 58257 TGCGTCGC-CGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTG 58315
|| ||| | || |||||||| || || || ||||||||| | |||||||||||
Sbjct 321 CCCG-CGCGCTGATCGATGCGTCGGGCCGTGAGATCCGCCTGGAAATCGACGGCGGCGTT 379
Query 58316 AAGGTGAACAATATCGGCGAGATCG-CGCGAATGGC 58350
|| || ||||||||| |||| |||| |||| ||||
Sbjct 380 AACGTCAACAATATCCGCGAAATCGCCGCGGCTGGC 415
>seq3043390
Length=1050
Score = 149 bits (164), Expect = 6e-31
Identities = 193/264 (73%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 58079 ACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACG 58138
|| || || ||||| ||| |||||| || || || ||||| ||||||||||| ||
Sbjct 821 ACCCTGCAACTGATCCGCGAAGGCGGCTGCAAGGCAGGCCTGGTGTTCAACCCGGCCACA 762
Query 58139 CCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTG 58198
||| | ||| || || ||||| |||||||| | || || | ||| ||||| |||
Sbjct 761 CCGTTGAGTGTGCTGGAATACGTGATGGACAAGGTCGACATGGTGCTGTTGATGAGCGTC 702
Query 58199 AACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTG 58258
||||| ||||| ||||| ||| || || || || ||| | ||||||||||||| |
Sbjct 701 AACCCGGGCTTTGGCGGGCAGAAGTTCATCCCCGGCACCCTGAACAAACTGCGCGAAGCG 642
Query 58259 C-GTCGCCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAA 58317
| | ||| | || |||||||| || ||| || ||||||||| | ||||| || || ||
Sbjct 641 CGGGCGCTG-ATCGATGCGTCGGGCCGCGATATCCGCCTGGAAATCGACGGTGGGGTCAA 583
Query 58318 GGTGAACAATATCGGCGAGATCGC 58341
|| |||||||| ||||||||||
Sbjct 582 CGTCAACAATATTCGCGAGATCGC 559
>seq2940411
Length=417
Score = 109 bits (120), Expect = 5e-19
Identities = 136/184 (74%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 58159 CGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCA 58218
||| |||||||| | || || || |||||||| ||| ||||||||||| ||||| ||
Sbjct 417 CGTGATGGACAAGGTCGACATGGTCTTGCTGATGAGCGTCAACCCAGGCTTTGGCGGGCA 358
Query 58219 GTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGC-CGCATTGATGCGT 58277
| || ||||| |||||| | || ||||||||| || ||| | || |||||||
Sbjct 357 GAAGTTCATTCCCGGTACGCTGAACAAGTTGCGCGAAGCCCG-CGCGCTGATCGATGCGT 299
Query 58278 CCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGA 58337
| || || || ||||||||| | ||||| || || || || ||||||||| |||| |
Sbjct 298 CGGGCCGTGATATCCGCCTGGAAATCGACGGTGGGGTTAACGTCAACAATATCCGCGAAA 239
Query 58338 TCGC 58341
||||
Sbjct 238 TCGC 235
>seq2855069
Length=274
Score = 91.5 bits (100), Expect = 1e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136
|||| || |||||||| ||| ||| || || || || ||||| ||||||||||| |
Sbjct 141 GCACCCTGCAGCTGATCCGCGAAGGCGGTTGCAAGGCCGGCCTGGTGTTCAACCCGGCCA 200
Query 58137 CGCCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCG 58196
||||| | ||| || || ||||| |||||||| | || || || |||||||| ||
Sbjct 201 CGCCGTTGAGTGTGCTTGAGTACGTGATGGACAAGGTCGACATGGTCTTGCTGATGAGCG 260
Query 58197 TGAACCCAGGCTT 58209
| |||||||||||
Sbjct 261 TCAACCCAGGCTT 273
>seq2495394
Length=166
Score = 91.5 bits (100), Expect = 1e-13
Identities = 122/167 (73%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 58159 CGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCA 58218
||| |||||||| | || || || |||||||| ||| ||||||||||| ||||| ||
Sbjct 166 CGTGATGGACAAGGTCGACATGGTCTTGCTGATGAGCGTCAACCCAGGCTTTGGCGGGCA 107
Query 58219 GTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGT-CGCCGCATTGATGCGT 58277
| || || || || ||| | |||||||| |||| ||| ||| | || |||||||
Sbjct 106 GAAATTCATCCCCGGCACCCTGAACAAACTGCGTGAAGCCCGTGCGCTG-ATCGATGCGT 48
Query 58278 CCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAAC 58324
| || ||||| ||||||||| | ||||| || || || || |||
Sbjct 47 CGGGCCGTGACATCCGCCTGGAAATCGACGGTGGGGTCAACGTCAAC 1
>seq2884197
Length=307
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136
|||| || || ||||| ||| |||||| || || || ||||| ||||||||||| |
Sbjct 174 GCACCCTGCAACTGATCCGCGAAGGCGGCTGCAAGGCAGGCCTGGTGTTCAACCCGGCCA 233
Query 58137 CGCCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCG 58196
| ||||| || || || ||||| |||||||| | || || || |||||||| ||
Sbjct 234 CTCCGCTGAGCGTGCTTGAGTACGTGATGGACAAGGTCGACATGGTCTTGCTGATGAGCG 293
Query 58197 TGAACCCAGGCTT 58209
| |||||||||||
Sbjct 294 TCAACCCAGGCTT 306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 453048664184280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |