Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq376597 158 1e-33 seq3043390 149 6e-31 seq2940411 109 5e-19 seq2855069 91.5 1e-13 seq2495394 91.5 1e-13 seq2884197 87.8 2e-12 >seq376597 Length=1212 Score = 158 bits (174), Expect = 1e-33 Identities = 203/276 (74%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136 |||| || || ||||| ||| ||| || || ||||| ||||| |||||||| || | Sbjct 141 GCACCCTGCAACTGATCCGTGAAGGCGGTTGCAAGGCGGGCCTGGTGTTCAACCCCGCCA 200 Query 58137 CGCCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCG 58196 ||||| | || || || ||||| |||||||| | || || || || ||||| || Sbjct 201 CGCCGTTGAGCGTGCTGGAGTACGTGATGGACAAGGTCGACATGGTCTTGTTGATGAGCG 260 Query 58197 TGAACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAG 58256 | |||||||||||||| || ||| || ||||| |||||| | || |||||||||| Sbjct 261 TCAACCCAGGCTTCGGTGGGCAGAAGTTCATTCCCGGTACGCTGAACAAGCTGCGCGAAG 320 Query 58257 TGCGTCGC-CGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTG 58315 || ||| | || |||||||| || || || ||||||||| | ||||||||||| Sbjct 321 CCCG-CGCGCTGATCGATGCGTCGGGCCGTGAGATCCGCCTGGAAATCGACGGCGGCGTT 379 Query 58316 AAGGTGAACAATATCGGCGAGATCG-CGCGAATGGC 58350 || || ||||||||| |||| |||| |||| |||| Sbjct 380 AACGTCAACAATATCCGCGAAATCGCCGCGGCTGGC 415 >seq3043390 Length=1050 Score = 149 bits (164), Expect = 6e-31 Identities = 193/264 (73%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 58079 ACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACG 58138 || || || ||||| ||| |||||| || || || ||||| ||||||||||| || Sbjct 821 ACCCTGCAACTGATCCGCGAAGGCGGCTGCAAGGCAGGCCTGGTGTTCAACCCGGCCACA 762 Query 58139 CCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTG 58198 ||| | ||| || || ||||| |||||||| | || || | ||| ||||| ||| Sbjct 761 CCGTTGAGTGTGCTGGAATACGTGATGGACAAGGTCGACATGGTGCTGTTGATGAGCGTC 702 Query 58199 AACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTG 58258 ||||| ||||| ||||| ||| || || || || ||| | ||||||||||||| | Sbjct 701 AACCCGGGCTTTGGCGGGCAGAAGTTCATCCCCGGCACCCTGAACAAACTGCGCGAAGCG 642 Query 58259 C-GTCGCCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAA 58317 | | ||| | || |||||||| || ||| || ||||||||| | ||||| || || || Sbjct 641 CGGGCGCTG-ATCGATGCGTCGGGCCGCGATATCCGCCTGGAAATCGACGGTGGGGTCAA 583 Query 58318 GGTGAACAATATCGGCGAGATCGC 58341 || |||||||| |||||||||| Sbjct 582 CGTCAACAATATTCGCGAGATCGC 559 >seq2940411 Length=417 Score = 109 bits (120), Expect = 5e-19 Identities = 136/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 58159 CGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCA 58218 ||| |||||||| | || || || |||||||| ||| ||||||||||| ||||| || Sbjct 417 CGTGATGGACAAGGTCGACATGGTCTTGCTGATGAGCGTCAACCCAGGCTTTGGCGGGCA 358 Query 58219 GTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGC-CGCATTGATGCGT 58277 | || ||||| |||||| | || ||||||||| || ||| | || ||||||| Sbjct 357 GAAGTTCATTCCCGGTACGCTGAACAAGTTGCGCGAAGCCCG-CGCGCTGATCGATGCGT 299 Query 58278 CCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGA 58337 | || || || ||||||||| | ||||| || || || || ||||||||| |||| | Sbjct 298 CGGGCCGTGATATCCGCCTGGAAATCGACGGTGGGGTTAACGTCAACAATATCCGCGAAA 239 Query 58338 TCGC 58341 |||| Sbjct 238 TCGC 235 >seq2855069 Length=274 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136 |||| || |||||||| ||| ||| || || || || ||||| ||||||||||| | Sbjct 141 GCACCCTGCAGCTGATCCGCGAAGGCGGTTGCAAGGCCGGCCTGGTGTTCAACCCGGCCA 200 Query 58137 CGCCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCG 58196 ||||| | ||| || || ||||| |||||||| | || || || |||||||| || Sbjct 201 CGCCGTTGAGTGTGCTTGAGTACGTGATGGACAAGGTCGACATGGTCTTGCTGATGAGCG 260 Query 58197 TGAACCCAGGCTT 58209 | ||||||||||| Sbjct 261 TCAACCCAGGCTT 273 >seq2495394 Length=166 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 58159 CGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCA 58218 ||| |||||||| | || || || |||||||| ||| ||||||||||| ||||| || Sbjct 166 CGTGATGGACAAGGTCGACATGGTCTTGCTGATGAGCGTCAACCCAGGCTTTGGCGGGCA 107 Query 58219 GTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGT-CGCCGCATTGATGCGT 58277 | || || || || ||| | |||||||| |||| ||| ||| | || ||||||| Sbjct 106 GAAATTCATCCCCGGCACCCTGAACAAACTGCGTGAAGCCCGTGCGCTG-ATCGATGCGT 48 Query 58278 CCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAAC 58324 | || ||||| ||||||||| | ||||| || || || || ||| Sbjct 47 CGGGCCGTGACATCCGCCTGGAAATCGACGGTGGGGTCAACGTCAAC 1 >seq2884197 Length=307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136 |||| || || ||||| ||| |||||| || || || ||||| ||||||||||| | Sbjct 174 GCACCCTGCAACTGATCCGCGAAGGCGGCTGCAAGGCAGGCCTGGTGTTCAACCCGGCCA 233 Query 58137 CGCCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCG 58196 | ||||| || || || ||||| |||||||| | || || || |||||||| || Sbjct 234 CTCCGCTGAGCGTGCTTGAGTACGTGATGGACAAGGTCGACATGGTCTTGCTGATGAGCG 293 Query 58197 TGAACCCAGGCTT 58209 | ||||||||||| Sbjct 294 TCAACCCAGGCTT 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453048664184280