Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_027995.1
Length=41666
Score E
Sequences producing significant alignments: (Bits) Value
seq268701 98.7 3e-16
seq3088487 96.9 9e-16
seq2799564 89.7 1e-13
seq2951953 87.8 5e-13
seq2966539 82.4 2e-11
>seq268701
Length=8118
Score = 98.7 bits (108), Expect = 3e-16
Identities = 127/172 (74%), Gaps = 5/172 (3%)
Strand=Plus/Minus
Query 41289 ACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTC-ATCTTCGGTAAGCTGGC 41347
|| ||| ||||| || |||| ||||||||||| || ||| || ||||| ||| ||||
Sbjct 8110 ACTGGCCAGAAGGTCGAGAAAACCGAATGGCACCGTGT-GTCGATGTTCGGCAAGGTGGC 8052
Query 41348 AGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCG 41407
|||||| || | |||||||||||||||||| |||| | ||||||||||| ||||
Sbjct 8051 AGAAATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTTTACATTGAAGGCAAACTGCA 7992
Query 41408 AACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAATC 41459
||| || | || ||| | | ||| | | || |||||||| ||||||
Sbjct 7991 AACCCGCGAGTG---GGAAAAAGACGGCATCAAGCGTTACACCACCGAAATC 7943
>seq3088487
Length=16894
Score = 96.9 bits (106), Expect = 9e-16
Identities = 258/385 (67%), Gaps = 12/385 (3%)
Strand=Plus/Plus
Query 9155 CAGGTTGCGCAGGTACGCGTTCACGCCTTCAATCACGTCATTGACGTATTGTTTGGTGAT 9214
||||| ||| | |||| | || ||| || |||| || |||| ||| ||||||||
Sbjct 9536 CAGGTCCTGCATGAACGCCTGCAGGCCGTCGGTCACATCCTTGATGTAGGTCTTGGTGAT 9595
Query 9215 GCCACGGTCTACGGCCCACAGGTGTGCACGCAGCAGACTGTCATTGATGATGTCAGCCGT 9274
||||||||| || ||||| |||| | || | ||| ||| ||| || | ||
Sbjct 9596 GCCACGGTCGACTGCCCATTTGTGTCCGGCGAGGATCGCGTCCATGACGATATCCACGGT 9655
Query 9275 GCGAACCACGCACAGGAACGCCCATTTCTGATCGCTGGAACAG-GTGCGGTTGCCCCACA 9333
||| || | | || ||||| ||| |||| ||| ||| || |||||||||||||
Sbjct 9656 GCGCACGCGGGTGACAAATGCCCACTTCGGATCCGAGGA-CAGCGTACGGTTGCCCCACA 9714
Query 9334 GGCGGAAACCGTCCTGGCGAATGATGGTGGTGA-CTTCGTTTTCATTCAGCAGGTTTGCA 9392
|||| ||||| | | ||| ||||||||||||| || | || || || ||||| ||
Sbjct 9715 GGCGATAACCGCCGTCGCGGATGATGGTGGTGATGTTTGCGTT-GTTGAGGAGGTTGGCC 9773
Query 9393 CGGCTGGATGTGT---CACCCAGGGTGAAATCAATGGTTCGGGCCGTGCCCTGGATGCCA 9449
|||| || | || || |||| ||| || | | || | || || ||||||
Sbjct 9774 CGGCAGGTTTCGTCCCCATCCAG---GAACTCCACCGGGCGCGAGGTCCCGGTGATGCCG 9830
Query 9450 TAGATTTCCTGGTTTGATGGTGACCACCAGAAACCGCGCTCGTTGTCGATGCGGGC-AAT 9508
| || | |||||| || ||| ||||||| ||| ||| ||| | | ||| |||
Sbjct 9831 ACAAACTCTTTGTTTGACGGCGACGACCAGAACCCGTACTCCGCATCGGTCCAGGCGAAT 9890
Query 9509 CAGACCAGCCACGCGCGGCGATGCC 9533
|| ||||||||| || ||| |||
Sbjct 9891 AAG-CCAGCCACGAACGCCGAGGCC 9914
>seq2799564
Length=235
Score = 89.7 bits (98), Expect = 1e-13
Identities = 97/126 (77%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 41289 ACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTC-ATCTTCGGTAAGCTGGC 41347
|||||| ||||| || |||| ||||||||||||| |||| || ||||| ||| | ||
Sbjct 74 ACCGGCCAGAAGGTCGAGAAAACCGAATGGCACCGCG-TGTCGATGTTCGGCAAGGTTGC 132
Query 41348 AGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCG 41407
||| || || |||| ||||||||||||||| |||| | ||| ||||||| ||||
Sbjct 133 AGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTTTACATCGAAGGCAAACTGCA 192
Query 41408 AACGCG 41413
||| ||
Sbjct 193 AACCCG 198
>seq2951953
Length=451
Score = 87.8 bits (96), Expect = 5e-13
Identities = 128/178 (72%), Gaps = 5/178 (3%)
Strand=Plus/Minus
Query 41301 AAAGAACAAACGGAATGGCACCGCGTTGTCATC-TTCGGTAAGCTGGCAGAAATTGCTAG 41359
||||| |||| || ||||||||||| ||| | ||||| ||| | ||||| || ||| |
Sbjct 378 AAAGAGAAAACCGAGTGGCACCGCGT-GTCGTTGTTCGGCAAGGTTGCAGAGATCGCTGG 320
Query 41360 CGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATG 41419
|| ||||||||||||||| |||| | ||| ||||||| |||| ||| || | ||
Sbjct 319 TGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAAGGCAAGCTGCAAACCCGCGAGTG 260
Query 41420 GCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAATCAACGTGGGCATGAATGGA 41477
||| | | ||| | | || ||||||||||||||| || | |||| | |||
Sbjct 259 ---GGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTAGTCGACATGCAAGGA 205
>seq2966539
Length=502
Score = 82.4 bits (90), Expect = 2e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 9272 CGTGCGAACCACGCACAGGAACGCCCATTTCTGATCGCTGGAACAGGTGCGGTTGCCCCA 9331
||||||||| | | ||| ||||| ||| |||| || ||| ||||||||||||||
Sbjct 500 CGTGCGAACGCGGGTGACGAATGCCCACTTCGGATCACTCGAAAGCGTGCGGTTGCCCCA 441
Query 9332 CAGGCGGAAACCGTCCTGGCGAATGATGGTGGTGACTTCGTTTTCATTCAGCAGGTTTGC 9391
|| |||| | ||||| | ||||||||| || | || | | | ||||||||||| ||
Sbjct 440 CAAGCGGTAGCCGTCATCGCGAATGATCGTCGCGATATTGGCGTTGTTCAGCAGGTTGGC 381
Query 9392 ACGGC 9396
|||||
Sbjct 380 ACGGC 376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128323995635496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |