Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq268701 98.7 3e-16 seq3088487 96.9 9e-16 seq2799564 89.7 1e-13 seq2951953 87.8 5e-13 seq2966539 82.4 2e-11 >seq268701 Length=8118 Score = 98.7 bits (108), Expect = 3e-16 Identities = 127/172 (74%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 41289 ACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTC-ATCTTCGGTAAGCTGGC 41347 || ||| ||||| || |||| ||||||||||| || ||| || ||||| ||| |||| Sbjct 8110 ACTGGCCAGAAGGTCGAGAAAACCGAATGGCACCGTGT-GTCGATGTTCGGCAAGGTGGC 8052 Query 41348 AGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCG 41407 |||||| || | |||||||||||||||||| |||| | ||||||||||| |||| Sbjct 8051 AGAAATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTTTACATTGAAGGCAAACTGCA 7992 Query 41408 AACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAATC 41459 ||| || | || ||| | | ||| | | || |||||||| |||||| Sbjct 7991 AACCCGCGAGTG---GGAAAAAGACGGCATCAAGCGTTACACCACCGAAATC 7943 >seq3088487 Length=16894 Score = 96.9 bits (106), Expect = 9e-16 Identities = 258/385 (67%), Gaps = 12/385 (3%) Strand=Plus/Plus Query 9155 CAGGTTGCGCAGGTACGCGTTCACGCCTTCAATCACGTCATTGACGTATTGTTTGGTGAT 9214 ||||| ||| | |||| | || ||| || |||| || |||| ||| |||||||| Sbjct 9536 CAGGTCCTGCATGAACGCCTGCAGGCCGTCGGTCACATCCTTGATGTAGGTCTTGGTGAT 9595 Query 9215 GCCACGGTCTACGGCCCACAGGTGTGCACGCAGCAGACTGTCATTGATGATGTCAGCCGT 9274 ||||||||| || ||||| |||| | || | ||| ||| ||| || | || Sbjct 9596 GCCACGGTCGACTGCCCATTTGTGTCCGGCGAGGATCGCGTCCATGACGATATCCACGGT 9655 Query 9275 GCGAACCACGCACAGGAACGCCCATTTCTGATCGCTGGAACAG-GTGCGGTTGCCCCACA 9333 ||| || | | || ||||| ||| |||| ||| ||| || ||||||||||||| Sbjct 9656 GCGCACGCGGGTGACAAATGCCCACTTCGGATCCGAGGA-CAGCGTACGGTTGCCCCACA 9714 Query 9334 GGCGGAAACCGTCCTGGCGAATGATGGTGGTGA-CTTCGTTTTCATTCAGCAGGTTTGCA 9392 |||| ||||| | | ||| ||||||||||||| || | || || || ||||| || Sbjct 9715 GGCGATAACCGCCGTCGCGGATGATGGTGGTGATGTTTGCGTT-GTTGAGGAGGTTGGCC 9773 Query 9393 CGGCTGGATGTGT---CACCCAGGGTGAAATCAATGGTTCGGGCCGTGCCCTGGATGCCA 9449 |||| || | || || |||| ||| || | | || | || || |||||| Sbjct 9774 CGGCAGGTTTCGTCCCCATCCAG---GAACTCCACCGGGCGCGAGGTCCCGGTGATGCCG 9830 Query 9450 TAGATTTCCTGGTTTGATGGTGACCACCAGAAACCGCGCTCGTTGTCGATGCGGGC-AAT 9508 | || | |||||| || ||| ||||||| ||| ||| ||| | | ||| ||| Sbjct 9831 ACAAACTCTTTGTTTGACGGCGACGACCAGAACCCGTACTCCGCATCGGTCCAGGCGAAT 9890 Query 9509 CAGACCAGCCACGCGCGGCGATGCC 9533 || ||||||||| || ||| ||| Sbjct 9891 AAG-CCAGCCACGAACGCCGAGGCC 9914 >seq2799564 Length=235 Score = 89.7 bits (98), Expect = 1e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 41289 ACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTC-ATCTTCGGTAAGCTGGC 41347 |||||| ||||| || |||| ||||||||||||| |||| || ||||| ||| | || Sbjct 74 ACCGGCCAGAAGGTCGAGAAAACCGAATGGCACCGCG-TGTCGATGTTCGGCAAGGTTGC 132 Query 41348 AGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCG 41407 ||| || || |||| ||||||||||||||| |||| | ||| ||||||| |||| Sbjct 133 AGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTTTACATCGAAGGCAAACTGCA 192 Query 41408 AACGCG 41413 ||| || Sbjct 193 AACCCG 198 >seq2951953 Length=451 Score = 87.8 bits (96), Expect = 5e-13 Identities = 128/178 (72%), Gaps = 5/178 (3%) Strand=Plus/Minus Query 41301 AAAGAACAAACGGAATGGCACCGCGTTGTCATC-TTCGGTAAGCTGGCAGAAATTGCTAG 41359 ||||| |||| || ||||||||||| ||| | ||||| ||| | ||||| || ||| | Sbjct 378 AAAGAGAAAACCGAGTGGCACCGCGT-GTCGTTGTTCGGCAAGGTTGCAGAGATCGCTGG 320 Query 41360 CGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATG 41419 || ||||||||||||||| |||| | ||| ||||||| |||| ||| || | || Sbjct 319 TGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAAGGCAAGCTGCAAACCCGCGAGTG 260 Query 41420 GCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAATCAACGTGGGCATGAATGGA 41477 ||| | | ||| | | || ||||||||||||||| || | |||| | ||| Sbjct 259 ---GGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTAGTCGACATGCAAGGA 205 >seq2966539 Length=502 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 9272 CGTGCGAACCACGCACAGGAACGCCCATTTCTGATCGCTGGAACAGGTGCGGTTGCCCCA 9331 ||||||||| | | ||| ||||| ||| |||| || ||| |||||||||||||| Sbjct 500 CGTGCGAACGCGGGTGACGAATGCCCACTTCGGATCACTCGAAAGCGTGCGGTTGCCCCA 441 Query 9332 CAGGCGGAAACCGTCCTGGCGAATGATGGTGGTGACTTCGTTTTCATTCAGCAGGTTTGC 9391 || |||| | ||||| | ||||||||| || | || | | | ||||||||||| || Sbjct 440 CAAGCGGTAGCCGTCATCGCGAATGATCGTCGCGATATTGGCGTTGTTCAGCAGGTTGGC 381 Query 9392 ACGGC 9396 ||||| Sbjct 380 ACGGC 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128323995635496