Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2658871 82.4 9e-11
seq197607 82.4 9e-11
>seq2658871
Length=189
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429
||| || || || | ||||||||||||||| |||||||| || || ||| ||||||||
Sbjct 105 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCAT 164
Query 122430 AAAGTCAAATGGATT 122444
|||||||||||||||
Sbjct 165 AAAGTCAAATGGATT 179
>seq197607
Length=1217
Score = 82.4 bits (90), Expect = 9e-11
Identities = 249/374 (67%), Gaps = 18/374 (5%)
Strand=Plus/Minus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|| || ||||| || || || || | || ||||| | |||| || ||||| ||
Sbjct 618 CGGTCGAAACGGCCTGGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGTCGCG 559
Query 11510 GCAATAACCACAATGCCAGTC--TCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGAT 11567
|| || || | ||||| ||| ||||| || ||||| |||||||| || ||||| |
Sbjct 558 GCGATGACGATGATGCC-GTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATTGGT 501
Query 11568 TAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCC 11625
| | || || || | |||||||| | || ||| || || | ||| || ||
Sbjct 500 TGAGGGTCTGCTCGCGCTCATCATGACCAC-CAC-CCATGCCGGCGCCGCGATGGCGACC 443
Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGT---TGATTTTCGCGGGCGATTTC 11682
||| ||||| || || || ||||||| || || ||| || || | | || |||
Sbjct 442 CACGGCATCGATTTCGTCGATGAAGATGATGCACGGTGCGTGCTTCTTG---GCCTGTTC 386
Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742
|| | ||||||||| | ||||||||||||| || ||||| || ||||||| | |
Sbjct 385 GAACATATCGCGAACACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGAACC 326
Query 11743 AGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800
|| | || || ||| || || || | |||||| || || || ||| || | |||
Sbjct 325 GGA--AATGGTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGGTT 268
Query 11801 TTTCCCGTACCTGG 11814
|| || ||||| ||
Sbjct 267 TTACCGGTACCCGG 254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603785953245600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |