Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2658871 82.4 9e-11 seq197607 82.4 9e-11 >seq2658871 Length=189 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || || || | ||||||||||||||| |||||||| || || ||| |||||||| Sbjct 105 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCAT 164 Query 122430 AAAGTCAAATGGATT 122444 ||||||||||||||| Sbjct 165 AAAGTCAAATGGATT 179 >seq197607 Length=1217 Score = 82.4 bits (90), Expect = 9e-11 Identities = 249/374 (67%), Gaps = 18/374 (5%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || || ||||| || || || || | || ||||| | |||| || ||||| || Sbjct 618 CGGTCGAAACGGCCTGGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGTCGCG 559 Query 11510 GCAATAACCACAATGCCAGTC--TCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGAT 11567 || || || | ||||| ||| ||||| || ||||| |||||||| || ||||| | Sbjct 558 GCGATGACGATGATGCC-GTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATTGGT 501 Query 11568 TAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCC 11625 | | || || || | |||||||| | || ||| || || | ||| || || Sbjct 500 TGAGGGTCTGCTCGCGCTCATCATGACCAC-CAC-CCATGCCGGCGCCGCGATGGCGACC 443 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGT---TGATTTTCGCGGGCGATTTC 11682 ||| ||||| || || || ||||||| || || ||| || || | | || ||| Sbjct 442 CACGGCATCGATTTCGTCGATGAAGATGATGCACGGTGCGTGCTTCTTG---GCCTGTTC 386 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 || | ||||||||| | ||||||||||||| || ||||| || ||||||| | | Sbjct 385 GAACATATCGCGAACACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGAACC 326 Query 11743 AGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800 || | || || ||| || || || | |||||| || || || ||| || | ||| Sbjct 325 GGA--AATGGTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGGTT 268 Query 11801 TTTCCCGTACCTGG 11814 || || ||||| || Sbjct 267 TTACCGGTACCCGG 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603785953245600