Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq197607 120 4e-22
seq2976925 95.1 1e-14
seq356191 89.7 6e-13
>seq197607
Length=1217
Score = 120 bits (132), Expect = 4e-22
Identities = 283/418 (68%), Gaps = 16/418 (4%)
Strand=Plus/Minus
Query 14018 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 14077
|||| ||||||||||| | | || ||| || | || ||| || || || |||
Sbjct 663 ATCTGTTCGCGACCGCGGATATCCGGCAGGCCAACCACAACCTGACGGTCGAAACGGCCT 604
Query 14078 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 14137
|| || || | || |||||| | ||| ||||| ||||| |||||||| | ||||
Sbjct 603 GGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGTCGCGGCGATGACGATGATG 544
Query 14138 CCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGC 14195
||||| || || || ||||| ||||||||| || | ||| |||| ||| || ||||
Sbjct 543 -CCGTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATTGGTTGAGGGTCTGCTCGC 486
Query 14196 GTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTC 14253
| ||||||| || | ||| || || | ||| || ||| ||||| || |||||
Sbjct 485 GCTCATCATGACCA--CCACCCATGCCGGCGCCGCGATGGCGACCCACGGCATCGATTTC 428
Query 14254 ATCGATGAAAACGATACATGGT---TGATTTTCACGGGCAACTTCAAAGATATCTCGCAC 14310
|||||||| | ||| || ||| || || | ||| ||| || ||||| || ||
Sbjct 427 GTCGATGAAGATGATGCACGGTGCGTGCTTCT---TGGCCTGTTCGAACATATCGCGAAC 371
Query 14311 TCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGA 14369
| ||||||| ||||| || ||||| || ||||| | | ||||| || | || ||
Sbjct 370 ACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGAACCGGAA-ATGGTGAAGA 312
Query 14370 AGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427
| || || || | |||||| || || || ||| || | ||| || || || || ||
Sbjct 311 ACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGGTTTTACCGGTACCCGG 254
>seq2976925
Length=544
Score = 95.1 bits (104), Expect = 1e-14
Identities = 185/267 (69%), Gaps = 10/267 (4%)
Strand=Plus/Minus
Query 14014 CAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCG 14073
|| ||||| ||||||||||| | | || | | || || || ||| ||||| ||
Sbjct 262 CAGAATCTGTTCGCGACCGCGGATATCCGGCAAGCCAACCACGACCTGACGGTCAAAACG 203
Query 14074 ACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAAC 14133
|||||| || || || || ||| || | ||| ||||| ||||| || ||||| |
Sbjct 202 ACCTGGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGTCGCAGCAATGACGAT 143
Query 14134 GATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGT 14191
|||||| ||| || || || ||||| |||||||| || | || |||| ||| |||
Sbjct 142 GATGCC-GTCATTCATT-TCGAAGCCGTCCATCTCCACCAGCAACTGGTTGAGGGTCTGT 85
Query 14192 TCGCGTTCATCATT--CGC-AGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCA 14248
|| || ||||| | ||| | ||| ||| |||| || || ||| || |||||
Sbjct 84 TCACGCTCATCGTGACCGCCACCCATGCCA---GCACCACGATGGCGACCAACAGCGTCG 28
Query 14249 ATTTCATCGATGAAAACGATACATGGT 14275
|||||||||||||| | ||| || |||
Sbjct 27 ATTTCATCGATGAAGATGATGCACGGT 1
>seq356191
Length=1159
Score = 89.7 bits (98), Expect = 6e-13
Identities = 184/267 (69%), Gaps = 10/267 (4%)
Strand=Plus/Plus
Query 14014 CAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCG 14073
|| ||||| ||||||||||| | | || ||| || | || ||| ||||| ||
Sbjct 283 CAGAATCTGTTCGCGACCGCGGATATCCGGCAGGCCAACCACCACCTGACGGTCAAAACG 342
Query 14074 ACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAAC 14133
|||||| || || || || ||| | | ||| |||||| ||||| || ||||| |
Sbjct 343 ACCTGGACGCAGCAGCGCAGGGTCCAATACGTCAGGGCGGTTAGTCGCAGCAATGACGAT 402
Query 14134 GATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGT 14191
|||| ||||| || || || ||||| ||||||||| | | || |||| ||| ||
Sbjct 403 GATG-CCGTCATTCATT-TCGAAGCCGTCCATCTCAACTAGCAACTGGTTGAGGGTCTGC 460
Query 14192 TCGCGTTCATCAT--TCGCAG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCA 14248
|| || ||||| | ||| | ||| ||| |||| || || ||| || |||||
Sbjct 461 TCACGCTCATCGTGACCGCCGCCCATGCCA---GCACCACGATGGCGACCAACAGCGTCG 517
Query 14249 ATTTCATCGATGAAAACGATACATGGT 14275
|||||||||||||| | ||| || |||
Sbjct 518 ATTTCATCGATGAAGATGATGCACGGT 544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 594559651025160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |