Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq197607 120 4e-22 seq2976925 95.1 1e-14 seq356191 89.7 6e-13 >seq197607 Length=1217 Score = 120 bits (132), Expect = 4e-22 Identities = 283/418 (68%), Gaps = 16/418 (4%) Strand=Plus/Minus Query 14018 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 14077 |||| ||||||||||| | | || ||| || | || ||| || || || ||| Sbjct 663 ATCTGTTCGCGACCGCGGATATCCGGCAGGCCAACCACAACCTGACGGTCGAAACGGCCT 604 Query 14078 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 14137 || || || | || |||||| | ||| ||||| ||||| |||||||| | |||| Sbjct 603 GGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGTCGCGGCGATGACGATGATG 544 Query 14138 CCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGC 14195 ||||| || || || ||||| ||||||||| || | ||| |||| ||| || |||| Sbjct 543 -CCGTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATTGGTTGAGGGTCTGCTCGC 486 Query 14196 GTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTC 14253 | ||||||| || | ||| || || | ||| || ||| ||||| || ||||| Sbjct 485 GCTCATCATGACCA--CCACCCATGCCGGCGCCGCGATGGCGACCCACGGCATCGATTTC 428 Query 14254 ATCGATGAAAACGATACATGGT---TGATTTTCACGGGCAACTTCAAAGATATCTCGCAC 14310 |||||||| | ||| || ||| || || | ||| ||| || ||||| || || Sbjct 427 GTCGATGAAGATGATGCACGGTGCGTGCTTCT---TGGCCTGTTCGAACATATCGCGAAC 371 Query 14311 TCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGA 14369 | ||||||| ||||| || ||||| || ||||| | | ||||| || | || || Sbjct 370 ACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGAACCGGAA-ATGGTGAAGA 312 Query 14370 AGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || || || | |||||| || || || ||| || | ||| || || || || || Sbjct 311 ACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGGTTTTACCGGTACCCGG 254 >seq2976925 Length=544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/267 (69%), Gaps = 10/267 (4%) Strand=Plus/Minus Query 14014 CAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCG 14073 || ||||| ||||||||||| | | || | | || || || ||| ||||| || Sbjct 262 CAGAATCTGTTCGCGACCGCGGATATCCGGCAAGCCAACCACGACCTGACGGTCAAAACG 203 Query 14074 ACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAAC 14133 |||||| || || || || ||| || | ||| ||||| ||||| || ||||| | Sbjct 202 ACCTGGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGTCGCAGCAATGACGAT 143 Query 14134 GATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGT 14191 |||||| ||| || || || ||||| |||||||| || | || |||| ||| ||| Sbjct 142 GATGCC-GTCATTCATT-TCGAAGCCGTCCATCTCCACCAGCAACTGGTTGAGGGTCTGT 85 Query 14192 TCGCGTTCATCATT--CGC-AGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCA 14248 || || ||||| | ||| | ||| ||| |||| || || ||| || ||||| Sbjct 84 TCACGCTCATCGTGACCGCCACCCATGCCA---GCACCACGATGGCGACCAACAGCGTCG 28 Query 14249 ATTTCATCGATGAAAACGATACATGGT 14275 |||||||||||||| | ||| || ||| Sbjct 27 ATTTCATCGATGAAGATGATGCACGGT 1 >seq356191 Length=1159 Score = 89.7 bits (98), Expect = 6e-13 Identities = 184/267 (69%), Gaps = 10/267 (4%) Strand=Plus/Plus Query 14014 CAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCG 14073 || ||||| ||||||||||| | | || ||| || | || ||| ||||| || Sbjct 283 CAGAATCTGTTCGCGACCGCGGATATCCGGCAGGCCAACCACCACCTGACGGTCAAAACG 342 Query 14074 ACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAAC 14133 |||||| || || || || ||| | | ||| |||||| ||||| || ||||| | Sbjct 343 ACCTGGACGCAGCAGCGCAGGGTCCAATACGTCAGGGCGGTTAGTCGCAGCAATGACGAT 402 Query 14134 GATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGT 14191 |||| ||||| || || || ||||| ||||||||| | | || |||| ||| || Sbjct 403 GATG-CCGTCATTCATT-TCGAAGCCGTCCATCTCAACTAGCAACTGGTTGAGGGTCTGC 460 Query 14192 TCGCGTTCATCAT--TCGCAG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCA 14248 || || ||||| | ||| | ||| ||| |||| || || ||| || ||||| Sbjct 461 TCACGCTCATCGTGACCGCCGCCCATGCCA---GCACCACGATGGCGACCAACAGCGTCG 517 Query 14249 ATTTCATCGATGAAAACGATACATGGT 14275 |||||||||||||| | ||| || ||| Sbjct 518 ATTTCATCGATGAAGATGATGCACGGT 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594559651025160