Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq197607 118 1e-21 seq3058874 104 3e-17 seq20229 95.1 1e-14 >seq197607 Length=1217 Score = 118 bits (130), Expect = 1e-21 Identities = 257/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||| || || || |||||||| || | ||| ||||| | ||| || || || Sbjct 622 CTGACGGTCGAAACGGCCTGGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGT 563 Query 9580 CGCGGCGATGACAACAATACC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTT 9638 |||||||||||| | || || | |||||| || || || |||||||| || | || Sbjct 562 CGCGGCGATGACGATGATGCCGTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATT 504 Query 9639 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTT 9696 |||| | || || || || ||||||| | | ||| || || | ||| || Sbjct 503 GGTTGAGGGTCTGCTCGCGCTCATCAT--GACCACCACCCATGCCGGCGCCGCGATGGCG 446 Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGCGAC 9753 ||||||||||| || || || ||||||| |||||| ||| || || | | || Sbjct 445 ACCCACGGCATCGATTTCGTCGATGAAGATGATGCACGGTGCGTGCTTCTTG---GCCTG 389 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 ||| || | ||| || ||||| |||| |||||||| || ||||| || ||||||| | Sbjct 388 TTCGAACATATCGCGAACACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGA 329 Query 9814 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 ||||| || | || ||| || || || | |||||| ||||| || ||| || | | Sbjct 328 ACCGGAA-ATGGTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGG 270 Query 9873 TCTTACCCGTACCTGG 9888 | ||||| ||||| || Sbjct 269 TTTTACCGGTACCCGG 254 >seq3058874 Length=1308 Score = 104 bits (114), Expect = 3e-17 Identities = 252/373 (68%), Gaps = 14/373 (4%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || |||||||| || ||||| || || | || || || || ||| Sbjct 460 CGGTCAAAACGGCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCCGGACGGTTGGTTGCG 519 Query 9584 GCGATGACAACAATACC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 |||||||| | || || | ||||| || ||||| |||||||| || | ||||| Sbjct 520 GCGATGACGATGATGCCGTCATTCATC-TCGAAACCGTCCATCTCCACCAGTAACTGGTT 578 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| || || |||| | || ||| || || | || || ||| Sbjct 579 GAGGGTCTGTTCACGCTCGTCATGACC--GCCACCCATGCCGGCGCCACGATGGCGACCC 636 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGACTTCA 9757 |||||||| || || |||||||||| ||||||||| || || | | || ||| Sbjct 637 ACGGCATCGATTTCGTCAATGAAGATGATGCATGGCGCGTGCTTCTTG---GCCTGTTCG 693 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || | ||| || ||||| |||| || ||||| || |||||||| ||||||| | || Sbjct 694 AACATATCGCGAACACGGCTGGCACCGACACCGACGAACATCTCGACAAAGTCAGAACCG 753 Query 9818 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 ||| || | | ||| || || || | ||| || ||||| || ||| || | || || Sbjct 754 GAA-ATGGTAAAGAACGGCACTTTGGCTTCGCCGGCAATCGCCTTGGCCAGCAAGGTTTT 812 Query 9877 ACCCGTACCTGGC 9889 ||| ||||| ||| Sbjct 813 ACCGGTACCCGGC 825 >seq20229 Length=11930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 ||||||| || ||||| ||||| ||||||||||| |||||||| ||||||| | |||| Sbjct 4964 AGTCTCAGACAGAGACAGGTACCCCATACATGCTCTACAAAGATTCCTGTAATCGGAAGA 4905 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 | || || |||| ||||| ||||| | ||| || || |||||||| |||| | Sbjct 4904 GCAACCAGCAGAACTTGGGAACCATCAAATGCAGCAACCTGTGCACAGAAATAGTGGAGT 4845 Query 105024 TTACAGACAAAGATGAG 105040 ||| |||||||||| Sbjct 4844 ATACCAGCAAAGATGAG 4828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560743207541640