Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq197607 118 1e-21
seq3058874 104 3e-17
seq20229 95.1 1e-14
>seq197607
Length=1217
Score = 118 bits (130), Expect = 1e-21
Identities = 257/376 (68%), Gaps = 14/376 (4%)
Strand=Plus/Minus
Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579
|| ||| || || || |||||||| || | ||| ||||| | ||| || || ||
Sbjct 622 CTGACGGTCGAAACGGCCTGGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGT 563
Query 9580 CGCGGCGATGACAACAATACC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTT 9638
|||||||||||| | || || | |||||| || || || |||||||| || | ||
Sbjct 562 CGCGGCGATGACGATGATGCCGTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATT 504
Query 9639 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTT 9696
|||| | || || || || ||||||| | | ||| || || | ||| ||
Sbjct 503 GGTTGAGGGTCTGCTCGCGCTCATCAT--GACCACCACCCATGCCGGCGCCGCGATGGCG 446
Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGCGAC 9753
||||||||||| || || || ||||||| |||||| ||| || || | | ||
Sbjct 445 ACCCACGGCATCGATTTCGTCGATGAAGATGATGCACGGTGCGTGCTTCTTG---GCCTG 389
Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
||| || | ||| || ||||| |||| |||||||| || ||||| || ||||||| |
Sbjct 388 TTCGAACATATCGCGAACACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGA 329
Query 9814 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872
||||| || | || ||| || || || | |||||| ||||| || ||| || | |
Sbjct 328 ACCGGAA-ATGGTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGG 270
Query 9873 TCTTACCCGTACCTGG 9888
| ||||| ||||| ||
Sbjct 269 TTTTACCGGTACCCGG 254
>seq3058874
Length=1308
Score = 104 bits (114), Expect = 3e-17
Identities = 252/373 (68%), Gaps = 14/373 (4%)
Strand=Plus/Plus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|| ||||| || |||||||| || ||||| || || | || || || || |||
Sbjct 460 CGGTCAAAACGGCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCCGGACGGTTGGTTGCG 519
Query 9584 GCGATGACAACAATACC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642
|||||||| | || || | ||||| || ||||| |||||||| || | |||||
Sbjct 520 GCGATGACGATGATGCCGTCATTCATC-TCGAAACCGTCCATCTCCACCAGTAACTGGTT 578
Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCC 9700
| || ||||| || || |||| | || ||| || || | || || |||
Sbjct 579 GAGGGTCTGTTCACGCTCGTCATGACC--GCCACCCATGCCGGCGCCACGATGGCGACCC 636
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGACTTCA 9757
|||||||| || || |||||||||| ||||||||| || || | | || |||
Sbjct 637 ACGGCATCGATTTCGTCAATGAAGATGATGCATGGCGCGTGCTTCTTG---GCCTGTTCG 693
Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817
|| | ||| || ||||| |||| || ||||| || |||||||| ||||||| | ||
Sbjct 694 AACATATCGCGAACACGGCTGGCACCGACACCGACGAACATCTCGACAAAGTCAGAACCG 753
Query 9818 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876
||| || | | ||| || || || | ||| || ||||| || ||| || | || ||
Sbjct 754 GAA-ATGGTAAAGAACGGCACTTTGGCTTCGCCGGCAATCGCCTTGGCCAGCAAGGTTTT 812
Query 9877 ACCCGTACCTGGC 9889
||| ||||| |||
Sbjct 813 ACCGGTACCCGGC 825
>seq20229
Length=11930
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963
||||||| || ||||| ||||| ||||||||||| |||||||| ||||||| | ||||
Sbjct 4964 AGTCTCAGACAGAGACAGGTACCCCATACATGCTCTACAAAGATTCCTGTAATCGGAAGA 4905
Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023
| || || |||| ||||| ||||| | ||| || || |||||||| |||| |
Sbjct 4904 GCAACCAGCAGAACTTGGGAACCATCAAATGCAGCAACCTGTGCACAGAAATAGTGGAGT 4845
Query 105024 TTACAGACAAAGATGAG 105040
||| ||||||||||
Sbjct 4844 ATACCAGCAAAGATGAG 4828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560743207541640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |