Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq16490 104 2e-17 seq1524 98.7 1e-15 seq28392 84.2 2e-11 >seq16490 Length=3700 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||| ||| ||| || || || || || Sbjct 886 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCATGAAGCCGAGTTCCAAACTGA 945 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||||| ||||||||||| ||||||||||| ||| Sbjct 946 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 1005 Query 117425 ATCGT 117429 || || Sbjct 1006 ATAGT 1010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 886 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCATGAAGCCGAGTTCCAAACTGA 945 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||||| ||||||| ||||| || ||||||||||| |||||| Sbjct 946 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 1005 Query 152149 ATCGT 152153 || || Sbjct 1006 ATAGT 1010 >seq1524 Length=22915 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||| ||||| |||| || |||| |||||||||||| |||| | ||||| || || Sbjct 821 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTG-GTACCAAACTG 763 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| ||| |||||||| || ||| |||||||||||| |||||||| |||| Sbjct 762 ACCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGAT 703 Query 117424 AATCGT 117429 ||| || Sbjct 702 AATGGT 697 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | ||||||||||| || || || |||||||| Sbjct 821 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTGGTACCAAACTGA 762 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||| || || ||| |||||| || |||||||||||||| | | Sbjct 761 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGATA 702 Query 152149 ATCGT 152153 || || Sbjct 701 ATGGT 697 >seq28392 Length=738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| | || ||||||||||| || | |||| | ||||||| ||||| Sbjct 267 GGCAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCACTGGAAAACGTGAGGCC 326 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGA 74868 |||||| ||||| || ||||| | ||| || || | | || || ||||| ||||||| Sbjct 327 AGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCA-AAAGAACCGGAAAAGAAGA 385 Query 74869 TGCCTTCGAC 74878 ||||||| || Sbjct 386 TGCCTTCCAC 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526089967057800