Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq16490 104 2e-17
seq1524 98.7 1e-15
seq28392 84.2 2e-11
>seq16490
Length=3700
Score = 104 bits (114), Expect = 2e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| ||||| ||| ||| || || || || ||
Sbjct 886 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCATGAAGCCGAGTTCCAAACTGA 945
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | ||||||| ||||||||||| ||||||||||| |||
Sbjct 946 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 1005
Query 117425 ATCGT 117429
|| ||
Sbjct 1006 ATAGT 1010
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || ||||| ||||| || ||||| |||||||||||
Sbjct 886 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCATGAAGCCGAGTTCCAAACTGA 945
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || | ||||| ||||||| ||||| || ||||||||||| ||||||
Sbjct 946 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 1005
Query 152149 ATCGT 152153
|| ||
Sbjct 1006 ATAGT 1010
>seq1524
Length=22915
Score = 98.7 bits (108), Expect = 1e-15
Identities = 99/126 (79%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363
||||| ||||| |||| || |||| |||||||||||| |||| | ||||| || ||
Sbjct 821 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTG-GTACCAAACTG 763
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423
||| | |||| ||| |||||||| || ||| |||||||||||| |||||||| ||||
Sbjct 762 ACCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGAT 703
Query 117424 AATCGT 117429
||| ||
Sbjct 702 AATGGT 697
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | ||||||||||| || || || ||||||||
Sbjct 821 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTGGTACCAAACTGA 762
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | ||||| || || ||| |||||| || |||||||||||||| | |
Sbjct 761 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGATA 702
Query 152149 ATCGT 152153
|| ||
Sbjct 701 ATGGT 697
>seq28392
Length=738
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809
|||||| || ||| | || ||||||||||| || | |||| | ||||||| |||||
Sbjct 267 GGCAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCACTGGAAAACGTGAGGCC 326
Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGA 74868
|||||| ||||| || ||||| | ||| || || | | || || ||||| |||||||
Sbjct 327 AGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCA-AAAGAACCGGAAAAGAAGA 385
Query 74869 TGCCTTCGAC 74878
||||||| ||
Sbjct 386 TGCCTTCCAC 395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 526089967057800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |