Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq155098 158 1e-33 seq185925 149 7e-31 seq300236 136 4e-27 seq2709013 132 5e-26 seq66256 127 2e-24 seq2452699 113 5e-20 seq317140 100 3e-16 seq2278510 96.9 4e-15 seq1809803 95.1 1e-14 seq3046829 93.3 5e-14 seq87282 93.3 5e-14 seq84207 91.5 2e-13 seq237091 89.7 6e-13 seq234195 86.0 7e-12 seq16490 82.4 8e-11 >seq155098 Length=7669 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || || ||||| || ||||| ||||| || | Sbjct 7437 ATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 7378 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||| | || || ||||| ||||| ||||||||||| |||||| Sbjct 7377 GATACAATAGAAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 7318 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || |||||||| |||||||| || ||||| ||||| | | ||||| | Sbjct 7317 CAAATACTGATCTTTGCTGGCAAGCAACTGGAAGATGAACGTACTTTGTCTGACTACAGC 7258 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||||||||||||||| ||| | |||| ||||| Sbjct 7257 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCTTGGTGG 7211 >seq185925 Length=7279 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | ||||| || || || ||||| || ||||||||||| || | Sbjct 516 ATGCAGATTTTCATGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTTG 457 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||| ||||| ||||||||||| |||||| Sbjct 456 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 397 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || | |||||| |||||||| || |||| | ||| | | ||||| || Sbjct 396 CAAAGACAGATCTGTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAAC 337 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||||||||||||||| ||| | |||| ||||| Sbjct 336 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCATGGTGG 290 >seq300236 Length=7644 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || || || || || ||||| ||||| ||| | | Sbjct 7413 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAG 7472 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | |||| || || || || || ||||| || ||||||||||| Sbjct 7473 TGACACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGACCA 7532 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 7533 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTACAA 7592 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||||| || || ||| | || || | ||||| Sbjct 7593 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 7640 >seq2709013 Length=200 Score = 132 bits (146), Expect = 5e-26 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 27437 AGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTC 27496 |||| || ||||| ||| |||| | |||| || | |||| | ||||| || || | Sbjct 200 AGACCATCACTCTCGAGCTTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAGATCC 141 Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556 ||| ||||| ||||||||||| |||||||| | || || ||||||| |||||||| | Sbjct 140 AGGGTAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCATTGCTGGCAAGCAACTGG 81 Query 27557 AGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCT 27616 | |||| ||||| | | ||||| || | |||||||| ||| ||||||||||||| | Sbjct 80 AAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCCCTCTTCATCTAGTGT 21 Query 27617 TGCGTCTTCGCGGTGG 27632 || | ||||| ||||| Sbjct 20 TGAGACTTCGTGGTGG 5 >seq66256 Length=6617 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 1416 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAG 1475 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || ||||||| || || ||||| ||||| || ||||| || ||||| Sbjct 1476 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 1535 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| | ||||| || || |||| || || || | || || || Sbjct 1536 GCAGAGGCTCATCTTTGCCAGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1595 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || | || || || || ||| | | ||| | ||||| Sbjct 1596 CATCCAGAAAGAGTAGACCCTGCACCTGGTCCTTCATCTGAGGGGTGG 1643 >seq2452699 Length=160 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||| | || Sbjct 23 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 82 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || ||||| ||||| || ||||| || |||||| Sbjct 83 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 142 Query 27526 CAGCGTCTAATTTTTGC 27542 ||| | || || ||||| Sbjct 143 CAGAGGCTCATCTTTGC 159 >seq317140 Length=4972 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||| ||| ||||| || | |||||||| ||||| ||||||| ||| | || Sbjct 4225 ATGCAGATCTCTGTGAAGACCCTGATGGGCAAGACAATTACCCTTGAGGG-GAGCCCAGT 4283 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || || ||||| || ||||||||||| || || || ||||| Sbjct 4284 GACACCACTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAA 4343 Query 27526 CAGCGTCTAATTTTTGCTGG--TAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 | ||| || ||| | || || | ||| || ||| ||| || | ||||||| | Sbjct 4344 CCGCGGCTGATTGTCGCGGGCACACGCAGCTGGAGCATGGCTACACTCCGTCAGACTACA 4403 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| || || ||||| || || | || | ||||| || || || Sbjct 4404 ATATCCAGAAAGAGTCCACCCTGCACATGGTGCTTCGTCTGCGAGGCGG 4452 >seq2278510 Length=135 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | ||||| || || ||||| ||||| ||||||||||| |||||||| | | || Sbjct 128 AAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACAGAT 69 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 |||||||| |||||||| || |||| | ||| | | ||||| || | |||||||| Sbjct 68 CTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAACATTCAAAAGGA 9 Query 27597 ATCCACTC 27604 ||||||| Sbjct 8 GTCCACTC 1 >seq1809803 Length=127 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||||| || || ||||| ||||| ||||||||||| |||||||| | || || Sbjct 127 AATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATC 68 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||| |||| |||||||| || |||| | ||| | | ||||| || | |||||||| Sbjct 67 TTTTCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAACATTCAAAAGGAG 8 Query 27598 TCCACTC 27604 ||||||| Sbjct 7 TCCACTC 1 >seq3046829 Length=1098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || ||||| ||||| ||| |||||| | ||| || | || || |||||| Sbjct 827 AAGGCCAAGATCCAGGATAAGGAAAGAACTCCTCCTGGCCAACAAAGACTGATCTTTGCT 886 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || |||||||| || |||| | ||| | | ||| || | | ||||||||||| | Sbjct 887 GGCAAGCAACTGGAAGATGGACATACTTTGTCTGACCTCAACATTCGAAAGGAATCCATT 946 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||||||| ||| | ||||| ||||| Sbjct 947 CTTTATCTAGTGTTGAGACTTCGTGGTGG 975 >seq87282 Length=9775 Score = 93.3 bits (102), Expect = 5e-14 Identities = 157/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | ||||| || || | ||||| || ||||||||||| ||| | Sbjct 2433 ATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTAGAGCCCTCG 2492 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||| || || ||| |||||| ||||| Sbjct 2493 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAGCTCCTCCTGACCAA 2552 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || | |||||| |||||||| || || | |||| | | | | || Sbjct 2553 CAAAGACTGATCTATGCTGGCAAGCAACTGGAAGACGGATGTACTTTGAC---CCACAAC 2609 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||||| || || || ||| ||| | ||||| Sbjct 2610 ATTCAAAAGGAGCCCACTCTGCACCTTGTGTTGAAACTTTGTGGTGG 2656 >seq84207 Length=16436 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| || ||||| ||||| || || || ||||| || || || |||| || | Sbjct 34 TGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACACTCAAGGTCAAGCCCTCGA 93 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 ||| || | |||| | ||||| || || ||||| ||||||||||| ||||||| Sbjct 94 ATACCACAGAAAATGTAAAGGCCAAGATCCAGGAA------GGAATTCCTCCTGACCAGC 147 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 | | | | |||||||| |||||||| || |||| |||| | | ||||| || Sbjct 148 AAAGATCAGTCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACA 207 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||| ||| | |||||||||| | || ||| Sbjct 208 TTCAAAGGGAGTTCACTCTTCATATTGTGTTG 239 >seq237091 Length=19548 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | || Sbjct 7275 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATAACCCTTGAGGTCGAGCCCAGT 7216 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || || ||||| || ||||||||||| Sbjct 7215 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 7172 >seq234195 Length=9622 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||| ||||| ||| ||||||| |||||| Sbjct 1734 GATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGACCAG 1793 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGA-CTATAA 27584 || | || || ||||||| ||| |||| || ||||| || || | || | ||| || Sbjct 1794 CAAAGACTGATCATTGCTGGAAAGGAACTGGAAGATGAATGT-CCTTTGCCTATCTACAA 1852 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | | ||||| ||||||||||| || || ||| Sbjct 1853 CATTTAGAAGGAGTCCACTCTTCACCTTGTGTTG 1886 >seq16490 Length=3700 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| ||| | |||||||||||||| || || ||| | ||||| || |||| Sbjct 1010 ACTATTGTGAACTTGGCTCAGAACTTTGTGGGGAGCAACAACATCAACTTGCTTCAGCCT 951 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || ||||| || ||||| |||||||| ||| | ||||| || Sbjct 950 ATTGGTCAGTTTGGAACTCGGCTTCATGGGGGCAAAGATGCTGCAAGCCCTCGTTATATT 891 Query 32245 TTCAC 32249 ||||| Sbjct 890 TTCAC 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548292775702320