Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq213981 93.3 5e-14 >seq213981 Length=2920 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 32674 TGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGA 32733 |||||| || ||||| |||||||| || || ||| | || || | || || || ||| Sbjct 1327 TGTGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGA 1268 Query 32734 GAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTT 32793 | |||||| |||||||| ||| | ||||| || || || | ||||||||| || | Sbjct 1267 GGAAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTCACCT 1208 Query 32794 TAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAGG 32832 | | ||||| || ||||| ||| | |||||||||||| Sbjct 1207 TGTGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACAGG 1169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579894168302640