Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq291908 147 3e-30 seq107656 82.4 1e-10 >seq291908 Length=12262 Score = 147 bits (162), Expect = 3e-30 Identities = 565/882 (64%), Gaps = 39/882 (4%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || ||||| || || ||| | Sbjct 733 GAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAAATTGAAATGCTT 792 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | |||||||||||||||||| || ||||| |||| || | ||||||||| | Sbjct 793 GACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGTATTCACGTGGACACA 852 Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCTC-GGCCATCGCCAGGTGCTTCCCTAACGT 13861 || || | || || | | || || || ||| || |||||| ||| || Sbjct 853 AAATCAGAGGAATCATTTTTG-GCTGCAGCTGTGGGCATGGCATCCTGCTTCAGTAATGT 911 Query 13862 GGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGA 13921 | ||| | |||| | | |||||||| | |||||||| || || ||||| || Sbjct 912 CTTTGTCGCCAGTCAGCTGGAGAATGTGGTGTATGCATCCTGGAGCCGGGTTCAGGCTGA 971 Query 13922 CCTCAGCTGCATGTCGGACCT-----GGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTC 13976 || | ||||||| |||||| ||| | | | | |||| ||||||| | Sbjct 972 TCTTAACTGCATGCAGGACCTCTCCAGGATGAATGCAG-----ACTGGAAGTACCTGATA 1026 Query 13977 AACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036 || || ||||| ||||| || || | || |||||||||||||| || || ||| ||| Sbjct 1027 AATCTCTGCGGAATGGATTTTCCTATTAAAACCAACCTGGAGATTGTCAGGAAGCTCAAG 1086 Query 14037 GCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA--------GC 14088 || || ||||| ||| || | ||| | ||||| ||| || | Sbjct 1087 TTGTTGATGGGTGAGAACAACCTAGAAACGGAGAGAATGCCATCCCATAAAAAAGAAAGG 1146 Query 14089 TGCACC--GCATCAGGAAGAGGCACGTGG-TGGCCAGCGGCGGCGTGGTGGTCAACACCG 14145 || | |||| | |||| |||| ||| ||| || ||||| | Sbjct 1147 TGGAAAAAGCATTATGAAGT----CGTGAATGGAAAGC----------TGACCAACATGG 1192 Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205 | | |||| | || || || | || | ||| | |||| || || |||| Sbjct 1193 GAACTGACAAAATACATCCACCTCTTGAAACACCTCTGTTTTCAGGAAGTGCCTATTTTG 1252 Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265 ||||| |||||| ||||| | ||| ||| || || | | | | ||| Sbjct 1253 TGGTCAGTAGGGAGTATGTGGAGTACGTGCTCCAGAACCAAAATATCCAAAAGTTTATGG 1312 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | ||| | | ||||| |||||||| |||||| | || |||||||| | ||||| || Sbjct 1313 AGTGGGCCAAAGACACATACAGCCCTGACGAGTATCTCTGGGCCACTATTCAGAGGATCC 1372 Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCC 14384 || | ||| ||| | | || | | ||||||||||| || |||||| ||| Sbjct 1373 CCGA-AGTCCCAGGGTCACTGTCCTTGAGCCATAAGTACGACACGTCTGACATGCAGGCG 1431 Query 14385 AAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTAC 14444 | | |||||| || || ||||| |||| || || || | || || |||| ||| Sbjct 1432 ATTGCCAGGTTTGTTAAATGGCAGTACTTTGAAGGAGACGTTTCCAAGGGCGCCCCCTAC 1491 Query 14445 CCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAG 14504 ||||| |||| |||| ||||||| | | || | ||| | ||||| | || ||| |||| Sbjct 1492 CCGCCGTGCGGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCTGGTGACTTGAAC 1551 Query 14505 TGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 |||||| | |||| | ||| |||| |||||||| |||||| Sbjct 1552 TGGCTGCTGCGCGTGCACCACTTGTTTGCCAACAAATTCGAC 1593 >seq107656 Length=18857 Score = 82.4 bits (90), Expect = 1e-10 Identities = 185/275 (67%), Gaps = 10/275 (4%) Strand=Plus/Plus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACG--GGACGC 14334 ||||| || ||||| || || ||||| ||||||||| | ||| | || || ||| || Sbjct 5071 GACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG--TGCACCATGGATGC 5128 Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 | || | ||| ||| |||||| ||| ||| |||||| |||| | |||| Sbjct 5129 CTGGCTCTGTTCCCTACCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 5188 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | ||||||||||| || | ||||| ||| ||| | ||||| | || | |||||| Sbjct 5189 TGGTCAAGTGGCAGGACCATGAGGGAGATGTCAGCATGGGGGCACCTTATGCACCTTGCT 5248 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGG---CTGA 14511 || ||||| | ||||| ||||| | ||| |||| ||| || | ||| || Sbjct 5249 CTGGAATCCATCAGCGGGCCATTTGCATTTATGGGGCCGGGGACCTGCACTGGATTCTCC 5308 Query 14512 AGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 ||| || ||||| || || |||||||| ||| Sbjct 5309 AGA---ACCATCACCTCTTGGCAAACAAGTTTGAC 5340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633307659183360