Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq291908 147 3e-30
seq107656 82.4 1e-10
>seq291908
Length=12262
Score = 147 bits (162), Expect = 3e-30
Identities = 565/882 (64%), Gaps = 39/882 (4%)
Strand=Plus/Plus
Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742
||||||| |||||||| || || || || || ||| | || ||||| || || ||| |
Sbjct 733 GAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAAATTGAAATGCTT 792
Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802
|| | |||||||||||||||||| || ||||| |||| || | ||||||||| |
Sbjct 793 GACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGTATTCACGTGGACACA 852
Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCTC-GGCCATCGCCAGGTGCTTCCCTAACGT 13861
|| || | || || | | || || || ||| || |||||| ||| ||
Sbjct 853 AAATCAGAGGAATCATTTTTG-GCTGCAGCTGTGGGCATGGCATCCTGCTTCAGTAATGT 911
Query 13862 GGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGA 13921
| ||| | |||| | | |||||||| | |||||||| || || ||||| ||
Sbjct 912 CTTTGTCGCCAGTCAGCTGGAGAATGTGGTGTATGCATCCTGGAGCCGGGTTCAGGCTGA 971
Query 13922 CCTCAGCTGCATGTCGGACCT-----GGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTC 13976
|| | ||||||| |||||| ||| | | | | |||| ||||||| |
Sbjct 972 TCTTAACTGCATGCAGGACCTCTCCAGGATGAATGCAG-----ACTGGAAGTACCTGATA 1026
Query 13977 AACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036
|| || ||||| ||||| || || | || |||||||||||||| || || ||| |||
Sbjct 1027 AATCTCTGCGGAATGGATTTTCCTATTAAAACCAACCTGGAGATTGTCAGGAAGCTCAAG 1086
Query 14037 GCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA--------GC 14088
|| || ||||| ||| || | ||| | ||||| ||| || |
Sbjct 1087 TTGTTGATGGGTGAGAACAACCTAGAAACGGAGAGAATGCCATCCCATAAAAAAGAAAGG 1146
Query 14089 TGCACC--GCATCAGGAAGAGGCACGTGG-TGGCCAGCGGCGGCGTGGTGGTCAACACCG 14145
|| | |||| | |||| |||| ||| ||| || ||||| |
Sbjct 1147 TGGAAAAAGCATTATGAAGT----CGTGAATGGAAAGC----------TGACCAACATGG 1192
Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205
| | |||| | || || || | || | ||| | |||| || || ||||
Sbjct 1193 GAACTGACAAAATACATCCACCTCTTGAAACACCTCTGTTTTCAGGAAGTGCCTATTTTG 1252
Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265
||||| |||||| ||||| | ||| ||| || || | | | | |||
Sbjct 1253 TGGTCAGTAGGGAGTATGTGGAGTACGTGCTCCAGAACCAAAATATCCAAAAGTTTATGG 1312
Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325
| ||| | | ||||| |||||||| |||||| | || |||||||| | ||||| ||
Sbjct 1313 AGTGGGCCAAAGACACATACAGCCCTGACGAGTATCTCTGGGCCACTATTCAGAGGATCC 1372
Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCC 14384
|| | ||| ||| | | || | | ||||||||||| || |||||| |||
Sbjct 1373 CCGA-AGTCCCAGGGTCACTGTCCTTGAGCCATAAGTACGACACGTCTGACATGCAGGCG 1431
Query 14385 AAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTAC 14444
| | |||||| || || ||||| |||| || || || | || || |||| |||
Sbjct 1432 ATTGCCAGGTTTGTTAAATGGCAGTACTTTGAAGGAGACGTTTCCAAGGGCGCCCCCTAC 1491
Query 14445 CCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAG 14504
||||| |||| |||| ||||||| | | || | ||| | ||||| | || ||| ||||
Sbjct 1492 CCGCCGTGCGGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCTGGTGACTTGAAC 1551
Query 14505 TGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
|||||| | |||| | ||| |||| |||||||| ||||||
Sbjct 1552 TGGCTGCTGCGCGTGCACCACTTGTTTGCCAACAAATTCGAC 1593
>seq107656
Length=18857
Score = 82.4 bits (90), Expect = 1e-10
Identities = 185/275 (67%), Gaps = 10/275 (4%)
Strand=Plus/Plus
Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACG--GGACGC 14334
||||| || ||||| || || ||||| ||||||||| | ||| | || || ||| ||
Sbjct 5071 GACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG--TGCACCATGGATGC 5128
Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394
| || | ||| ||| |||||| ||| ||| |||||| |||| | ||||
Sbjct 5129 CTGGCTCTGTTCCCTACCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 5188
Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454
| ||||||||||| || | ||||| ||| ||| | ||||| | || | ||||||
Sbjct 5189 TGGTCAAGTGGCAGGACCATGAGGGAGATGTCAGCATGGGGGCACCTTATGCACCTTGCT 5248
Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGG---CTGA 14511
|| ||||| | ||||| ||||| | ||| |||| ||| || | ||| ||
Sbjct 5249 CTGGAATCCATCAGCGGGCCATTTGCATTTATGGGGCCGGGGACCTGCACTGGATTCTCC 5308
Query 14512 AGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
||| || ||||| || || |||||||| |||
Sbjct 5309 AGA---ACCATCACCTCTTGGCAAACAAGTTTGAC 5340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633307659183360
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