Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2585192 136 3e-27 seq116363 132 4e-26 seq1495313 93.3 3e-14 seq118786 87.8 1e-12 >seq2585192 Length=178 Score = 136 bits (150), Expect = 3e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 29948 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 30007 |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || || Sbjct 11 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 70 Query 30008 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 30067 || |||||||| ||||||| |||||| | ||| || || ||||| || | |||||| Sbjct 71 AGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 130 Query 30068 AACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| || | |||||||||||| || || |||||||| Sbjct 131 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 168 >seq116363 Length=44347 Score = 132 bits (146), Expect = 4e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29948 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 30007 |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || || Sbjct 21703 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 21644 Query 30008 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 30067 || |||||||| |||| || |||||| | ||| || || ||||| || | |||||| Sbjct 21643 AGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAG 21584 Query 30068 AACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| || | |||||||||||| || || |||||||| Sbjct 21583 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 21546 >seq1495313 Length=124 Score = 93.3 bits (102), Expect = 3e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 29877 GCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCG 29936 |||| || | || || |||||| ||||| || |||||||| |||| ||||| || || | Sbjct 124 GCGGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTG 65 Query 29937 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 29996 | | || | |||| ||| || |||||||| ||||| || | |||||||||||||| | Sbjct 64 GCTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGA 5 Query 29997 AGGG 30000 |||| Sbjct 4 AGGG 1 >seq118786 Length=8115 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 2833 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 2774 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 2773 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391016377671012