Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq3019843 118 4e-22 seq2866129 102 3e-17 seq339174 100 1e-16 seq3087518 93.3 2e-14 seq2817542 82.4 3e-11 seq2765036 82.4 3e-11 >seq3019843 Length=802 Score = 118 bits (130), Expect = 4e-22 Identities = 192/271 (71%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 65114 CGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGTTCCCCGCT 65173 || ||||| ||||| || || ||||| |||||||| |||||||| ||| || ||||| Sbjct 530 CGAATCTGCGCATGGCTGATCAACGCAAAGATAAAACTGCCGCCGATGATATTGCCCGCC 589 Query 65174 AAAGTAGGTAGTGCGAAGGGCCAGAT-GAAATCGCTCCAGTGCAGCGTACCGTTAAACAC 65232 | || || ||||| |||| |||||| |||| |||| ||| |||||| Sbjct 590 AGGGTCGGCCCGGCGAACA-CCAGCCAGAAATCCTTCCACGGCAGTTCGCCGGCAAACAC 648 Query 65233 CAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGCAATAAG 65292 ||| || | ||| | || ||||| |||||||| ||| ||| ||||| || || || Sbjct 649 CAGGTACGACACTTCCGCCGAGCCGACGACGATGTGGGTGAAGTCGCCCAGCGCCATCAG 708 Query 65293 CCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCA-GGAAACATCCATA 65351 |||| |||| || || | | |||||||| || | || | || | |||||| | Sbjct 709 GTAGGTGATCAGGATGATGATGAACATCTTTGC-GCTTTCCATGGACGGGATCATCCACA 767 Query 65352 CCATAGTGGCGATCAGCCAGCCGGAAATGAT 65382 |||| |||||||||| |||||||||||| || Sbjct 768 CCATGGTGGCGATCATCCAGCCGGAAATAAT 798 >seq2866129 Length=286 Score = 102 bits (112), Expect = 3e-17 Identities = 192/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 65108 TCGTTACGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGTTC 65167 ||| | || |||||||| || || || | ||| ||||| || |||||||| |||||| Sbjct 279 TCGCTGCGAATCTGTGCGTGGCTGATCAGCGCAAAGATGAAACTGCCGCCGATGATGTTG 220 Query 65168 CCCGCTAAAGTAGGTAGTGCGAAGGGCCAGATGAAA-TCGCTCCAGTGCAGCGTACCGTT 65226 || || | || || ||||| |||| ||| || |||| |||| || Sbjct 219 CCGGCCAGTGTCGGGCCGGCGAACA-CCAGCCAAAAATCCTTCCACGGCAGTTCGCCCGC 161 Query 65227 AAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGC 65286 ||||||||| || || ||| | |||||||| ||||| || ||| ||||||||| || Sbjct 160 AAACACCAGGTACGAGACTTCCGCCGAACCGACGACGATATGGGTGAAGTCACCCAGCGC 101 Query 65287 AATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCA-GGAAACA 65345 || || |||| |||| || || | | || || || || | || | || | || Sbjct 100 CATCAGGTAGGTGATCAGGATGATGATGAACATTTTCGC-GCTTTCCATGGACGGGATCA 42 Query 65346 TCCATACCATAGTGGCGATCAGCCAGCCGGAAATGAT 65382 |||| ||||| |||||||||| |||||||||||| || Sbjct 41 TCCACACCATGGTGGCGATCATCCAGCCGGAAATAAT 5 >seq339174 Length=2397 Score = 100 bits (110), Expect = 1e-16 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 65114 CGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGTTCCCCGCT 65173 || ||||| ||||| || || | ||| || ||||| |||||||| ||| || ||||| Sbjct 270 CGAATCTGCGCATGGCTGATCAGCGCAAAAATAAAACTGCCGCCGATGATATTGCCCGCC 211 Query 65174 AAAGTAGGTAGTGCGAAGGGCCAGATGAAA-TCGCTCCAGTGCAGCGTACCGTTAAACAC 65232 | || || ||||| |||| ||| || |||| ||| ||| |||||| Sbjct 210 AGGGTCGGCCCGGCGAATA-CCAGCCAAAAGTCCTTCCACGGCAATTCGCCGGCAAACAC 152 Query 65233 CAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGCAATAAG 65292 ||| || | ||| | || ||||| |||||||| ||| ||| ||||| || || || Sbjct 151 CAGGTACGACACTTCCGCCGAGCCGACGACGATGTGGGTGAAGTCCCCCAGCGCCATCAG 92 Query 65293 CCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCA-GGAAACATCCATA 65351 | || |||| ||||| | | ||||| || || | || | |||| |||||| | Sbjct 91 GTAAGTGATCAGGATAATGATGAACATCTTCGC-GCTTTCCATGGACGGAATCATCCACA 33 Query 65352 CCATAGTGGCGATCAGCCAGCCGGAAATGAT 65382 |||| |||||||||| |||||||||||| || Sbjct 32 CCATGGTGGCGATCATCCAGCCGGAAATAAT 2 >seq3087518 Length=5293 Score = 93.3 bits (102), Expect = 2e-14 Identities = 208/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 65114 CGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGTTCCCCGCT 65173 || ||||| ||||| || || ||||| ||||||||| |||| ||| ||| || || || Sbjct 4801 CGAATCTGCGCATGGCTGATCAACGCAAAGATAAAGCTGCCACCGATGATATTGCCGGCC 4860 Query 65174 AAAGTAGGTAGTGCGAAGGGCCAGAT-GAAATCGCTCCAGTGCAGCGTACCGTTAAACAC 65232 | || || ||||| |||| ||| || ||| ||| ||| |||||| Sbjct 4861 AGGGTCGGGCCGGCGAATA-CCAGCCAGAAGTCATGCCACGACAGTTCGCCGGCAAACAC 4919 Query 65233 CAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGCAATAAG 65292 ||| || | ||| | || || || |||||||||||| || |||| || || || Sbjct 4920 CAGGTACGACACTTCCGCCGAGCCCACCACGATGTGAGTGAAATCGCCCAACGCCATCAG 4979 Query 65293 CCAGGTCATCAATATAATCA-CCACAATCTTTGCCGCACCCGCTGCAGGAAACATCCATA 65351 |||| |||| || || | |||| ||||| || || | || | |||||| | Sbjct 4980 GTAGGTGATCAGGATGATGATCCAC-ATCTTGGCGCTTTCCATCGACGGGATCATCCACA 5038 Query 65352 CCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTCGCTGGGGGTGT 65411 |||| |||||||||| |||||| || | ||| | ||||| ||||||| || || | || Sbjct 5039 CCATGGTGGCGATCATCCAGCCAGAGACGATGCCTTTGGCGAACATCTGGCCGGTGTCGT 5098 Query 65412 TCTTCAT 65418 | | ||| Sbjct 5099 TTTCCAT 5105 >seq2817542 Length=245 Score = 82.4 bits (90), Expect = 3e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 65344 CATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTCGCT 65403 |||||| ||||| |||||||||| |||||||||||| || | ||||| ||||||| || Sbjct 243 CATCCACACCATGGTGGCGATCATCCAGCCGGAAATAATGCCCTTGGCGAACATCTGGCC 184 Query 65404 GGGGGTGTTCTTCATCACATCCATGCCGATTTTGA 65438 ||||| ||| | ||| || | |||||||| || Sbjct 183 GGGGGCGTTTTCCATGACCTTGCGGCCGATTTCGA 149 >seq2765036 Length=219 Score = 82.4 bits (90), Expect = 3e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 65227 AAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGC 65286 ||||||||| || || ||| | || ||||| ||||| || ||| ||||||||| || Sbjct 63 AAACACCAGGTACGAGACTTCCGCCGACCCGACGACGATATGGGTGAAGTCACCCAGCGC 122 Query 65287 AATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCA-GGAAACA 65345 || || |||| |||| || || | | || || || || | || | |||| || Sbjct 123 CATCAGGTAGGTAATCAGGATGATGATGAACATTTTCGC-GCTTTCCATGGACGGAATCA 181 Query 65346 TCCATACCATAGTGGCGATCAGCCAGCCGGAAATGAT 65382 |||| ||||| |||||||||| |||||||||||| || Sbjct 182 TCCACACCATGGTGGCGATCATCCAGCCGGAAATAAT 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202991490648036