Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028656.1
Length=65955
Score E
Sequences producing significant alignments: (Bits) Value
seq3019843 118 4e-22
seq2866129 102 3e-17
seq339174 100 1e-16
seq3087518 93.3 2e-14
seq2817542 82.4 3e-11
seq2765036 82.4 3e-11
>seq3019843
Length=802
Score = 118 bits (130), Expect = 4e-22
Identities = 192/271 (71%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 65114 CGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGTTCCCCGCT 65173
|| ||||| ||||| || || ||||| |||||||| |||||||| ||| || |||||
Sbjct 530 CGAATCTGCGCATGGCTGATCAACGCAAAGATAAAACTGCCGCCGATGATATTGCCCGCC 589
Query 65174 AAAGTAGGTAGTGCGAAGGGCCAGAT-GAAATCGCTCCAGTGCAGCGTACCGTTAAACAC 65232
| || || ||||| |||| |||||| |||| |||| ||| ||||||
Sbjct 590 AGGGTCGGCCCGGCGAACA-CCAGCCAGAAATCCTTCCACGGCAGTTCGCCGGCAAACAC 648
Query 65233 CAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGCAATAAG 65292
||| || | ||| | || ||||| |||||||| ||| ||| ||||| || || ||
Sbjct 649 CAGGTACGACACTTCCGCCGAGCCGACGACGATGTGGGTGAAGTCGCCCAGCGCCATCAG 708
Query 65293 CCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCA-GGAAACATCCATA 65351
|||| |||| || || | | |||||||| || | || | || | |||||| |
Sbjct 709 GTAGGTGATCAGGATGATGATGAACATCTTTGC-GCTTTCCATGGACGGGATCATCCACA 767
Query 65352 CCATAGTGGCGATCAGCCAGCCGGAAATGAT 65382
|||| |||||||||| |||||||||||| ||
Sbjct 768 CCATGGTGGCGATCATCCAGCCGGAAATAAT 798
>seq2866129
Length=286
Score = 102 bits (112), Expect = 3e-17
Identities = 192/277 (69%), Gaps = 4/277 (1%)
Strand=Plus/Minus
Query 65108 TCGTTACGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGTTC 65167
||| | || |||||||| || || || | ||| ||||| || |||||||| ||||||
Sbjct 279 TCGCTGCGAATCTGTGCGTGGCTGATCAGCGCAAAGATGAAACTGCCGCCGATGATGTTG 220
Query 65168 CCCGCTAAAGTAGGTAGTGCGAAGGGCCAGATGAAA-TCGCTCCAGTGCAGCGTACCGTT 65226
|| || | || || ||||| |||| ||| || |||| |||| ||
Sbjct 219 CCGGCCAGTGTCGGGCCGGCGAACA-CCAGCCAAAAATCCTTCCACGGCAGTTCGCCCGC 161
Query 65227 AAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGC 65286
||||||||| || || ||| | |||||||| ||||| || ||| ||||||||| ||
Sbjct 160 AAACACCAGGTACGAGACTTCCGCCGAACCGACGACGATATGGGTGAAGTCACCCAGCGC 101
Query 65287 AATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCA-GGAAACA 65345
|| || |||| |||| || || | | || || || || | || | || | ||
Sbjct 100 CATCAGGTAGGTGATCAGGATGATGATGAACATTTTCGC-GCTTTCCATGGACGGGATCA 42
Query 65346 TCCATACCATAGTGGCGATCAGCCAGCCGGAAATGAT 65382
|||| ||||| |||||||||| |||||||||||| ||
Sbjct 41 TCCACACCATGGTGGCGATCATCCAGCCGGAAATAAT 5
>seq339174
Length=2397
Score = 100 bits (110), Expect = 1e-16
Identities = 188/271 (69%), Gaps = 4/271 (1%)
Strand=Plus/Minus
Query 65114 CGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGTTCCCCGCT 65173
|| ||||| ||||| || || | ||| || ||||| |||||||| ||| || |||||
Sbjct 270 CGAATCTGCGCATGGCTGATCAGCGCAAAAATAAAACTGCCGCCGATGATATTGCCCGCC 211
Query 65174 AAAGTAGGTAGTGCGAAGGGCCAGATGAAA-TCGCTCCAGTGCAGCGTACCGTTAAACAC 65232
| || || ||||| |||| ||| || |||| ||| ||| ||||||
Sbjct 210 AGGGTCGGCCCGGCGAATA-CCAGCCAAAAGTCCTTCCACGGCAATTCGCCGGCAAACAC 152
Query 65233 CAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGCAATAAG 65292
||| || | ||| | || ||||| |||||||| ||| ||| ||||| || || ||
Sbjct 151 CAGGTACGACACTTCCGCCGAGCCGACGACGATGTGGGTGAAGTCCCCCAGCGCCATCAG 92
Query 65293 CCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCA-GGAAACATCCATA 65351
| || |||| ||||| | | ||||| || || | || | |||| |||||| |
Sbjct 91 GTAAGTGATCAGGATAATGATGAACATCTTCGC-GCTTTCCATGGACGGAATCATCCACA 33
Query 65352 CCATAGTGGCGATCAGCCAGCCGGAAATGAT 65382
|||| |||||||||| |||||||||||| ||
Sbjct 32 CCATGGTGGCGATCATCCAGCCGGAAATAAT 2
>seq3087518
Length=5293
Score = 93.3 bits (102), Expect = 2e-14
Identities = 208/307 (68%), Gaps = 4/307 (1%)
Strand=Plus/Plus
Query 65114 CGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGTTCCCCGCT 65173
|| ||||| ||||| || || ||||| ||||||||| |||| ||| ||| || || ||
Sbjct 4801 CGAATCTGCGCATGGCTGATCAACGCAAAGATAAAGCTGCCACCGATGATATTGCCGGCC 4860
Query 65174 AAAGTAGGTAGTGCGAAGGGCCAGAT-GAAATCGCTCCAGTGCAGCGTACCGTTAAACAC 65232
| || || ||||| |||| ||| || ||| ||| ||| ||||||
Sbjct 4861 AGGGTCGGGCCGGCGAATA-CCAGCCAGAAGTCATGCCACGACAGTTCGCCGGCAAACAC 4919
Query 65233 CAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGCAATAAG 65292
||| || | ||| | || || || |||||||||||| || |||| || || ||
Sbjct 4920 CAGGTACGACACTTCCGCCGAGCCCACCACGATGTGAGTGAAATCGCCCAACGCCATCAG 4979
Query 65293 CCAGGTCATCAATATAATCA-CCACAATCTTTGCCGCACCCGCTGCAGGAAACATCCATA 65351
|||| |||| || || | |||| ||||| || || | || | |||||| |
Sbjct 4980 GTAGGTGATCAGGATGATGATCCAC-ATCTTGGCGCTTTCCATCGACGGGATCATCCACA 5038
Query 65352 CCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTCGCTGGGGGTGT 65411
|||| |||||||||| |||||| || | ||| | ||||| ||||||| || || | ||
Sbjct 5039 CCATGGTGGCGATCATCCAGCCAGAGACGATGCCTTTGGCGAACATCTGGCCGGTGTCGT 5098
Query 65412 TCTTCAT 65418
| | |||
Sbjct 5099 TTTCCAT 5105
>seq2817542
Length=245
Score = 82.4 bits (90), Expect = 3e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 65344 CATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTCGCT 65403
|||||| ||||| |||||||||| |||||||||||| || | ||||| ||||||| ||
Sbjct 243 CATCCACACCATGGTGGCGATCATCCAGCCGGAAATAATGCCCTTGGCGAACATCTGGCC 184
Query 65404 GGGGGTGTTCTTCATCACATCCATGCCGATTTTGA 65438
||||| ||| | ||| || | |||||||| ||
Sbjct 183 GGGGGCGTTTTCCATGACCTTGCGGCCGATTTCGA 149
>seq2765036
Length=219
Score = 82.4 bits (90), Expect = 3e-11
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 65227 AAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGC 65286
||||||||| || || ||| | || ||||| ||||| || ||| ||||||||| ||
Sbjct 63 AAACACCAGGTACGAGACTTCCGCCGACCCGACGACGATATGGGTGAAGTCACCCAGCGC 122
Query 65287 AATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCA-GGAAACA 65345
|| || |||| |||| || || | | || || || || | || | |||| ||
Sbjct 123 CATCAGGTAGGTAATCAGGATGATGATGAACATTTTCGC-GCTTTCCATGGACGGAATCA 181
Query 65346 TCCATACCATAGTGGCGATCAGCCAGCCGGAAATGAT 65382
|||| ||||| |||||||||| |||||||||||| ||
Sbjct 182 TCCACACCATGGTGGCGATCATCCAGCCGGAAATAAT 218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 202991490648036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |