Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq3084660 134 3e-27 seq3087822 109 1e-19 seq3088451 98.7 2e-16 >seq3084660 Length=3030 Score = 134 bits (148), Expect = 3e-27 Identities = 133/168 (79%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 28202 ATGCAGGAGGCGACTGGTAAGGCCGTTTCTGAAACCGTGGCCGAGTTCTCCAAGCTGGCC 28261 |||||||| ||||| || |||||||| || || || |||||||| ||||||||||| Sbjct 2198 ATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGGCT 2139 Query 28262 GATGATCCGGTCAAGGCGTC-GCAGCAGCTCAATGACCGCTATCACTACCTGACGGCCTC 28320 || ||||||||||||||||| || || ||| || || | || ||||||||||| ||||| Sbjct 2138 GACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCCTC 2080 Query 28321 GGTGTACGAGCAGATCACTGCCCTGGAGAGGCAGGGGGA-CACGCTGG 28367 ||| ||| ||| ||| || ||||||| ||| || || |||||||| Sbjct 2079 GGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCTGG 2032 >seq3087822 Length=6084 Score = 109 bits (120), Expect = 1e-19 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 28202 ATGCAGGAGGCGACTGGTAAGGCCGTTTCTGAAACCGTGGCCGAGTTCTCCAAGCTGGCC 28261 ||||||||||| || || |||||||| ||||| || || ||||||||||| ||||| Sbjct 5240 ATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGGCT 5181 Query 28262 GATGATCCGGTCAAGGCGT-CGCAGCAGCTCAATGACCGCTATCACTACCTGACGGCCTC 28320 || |||||||||||||| | ||| || ||| ||||| | || || |||||||| ||||| Sbjct 5180 GACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCCTC 5122 Query 28321 GGTGTACGAGCAGATCACTGCCCTGGA 28347 ||| || ||| || | || ||||| Sbjct 5121 GGTTTATTCGCAAATTTCAGCACTGGA 5095 Score = 84.2 bits (92), Expect = 5e-12 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 29144 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 29203 |||||||| || || ||||| |||| || ||| || ||||| || | | ||| Sbjct 4367 GACCAGGTGACGGCGGCCTACGAGGCCGAGATCACCGCACTGGAAGCCGTCAAGGGCAAG 4308 Query 29204 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 29263 | | || |||| || ||| ||||| |||||||||||||||||||| || | | | Sbjct 4307 AAGACAACATCGGCCGCGCAGAGCATCCAGCTGGACCAGAAGATCGCCGACGC-ACGCGC 4249 Query 29264 AA-CATGGTCAAGGCGCAGAAGAAGGCAGACGCCGACCTGGAAGTCCTCCAGCTCAACGA 29322 | ||||||||||||||||||| | || ||| | | || ||||| || | ||||| Sbjct 4248 AGGCATGGTCAAGGCGCAGAAGGACGCTGACAGCCAGCTTGAAGTGCTGGCGACGAACGA 4189 Query 29323 ACAGGGGCGCCTGAAGAAACAGG 29345 ||||||||| ||||||| Sbjct 4188 GACCGGGCGCCTGGCCAAACAGG 4166 >seq3088451 Length=13260 Score = 98.7 bits (108), Expect = 2e-16 Identities = 213/309 (69%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 29039 GACTACAGGAACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTGCTGA-GCTA 29097 |||||| | |||||| || || | || ||||||||||| || ||| || | ||| Sbjct 7367 GACTACCGAAACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTG 7426 Query 29098 TGCGGACTATGTCGCGCAGCGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCG 29156 | ||||||| | ||| || | ||| | |||||| |||| | |||||| | || || | Sbjct 7427 T-CGGACTACGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGG 7484 Query 29157 CAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCAC 29214 | || || ||| || ||| | || ||||||||| | || | |||| ||| || Sbjct 7485 CCGCGTACCAGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAAC 7542 Query 29215 GGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAA 29274 | |||| ||| | ||| |||||||| ||||||||||| || || | |||||||| Sbjct 7543 GACGGCTCAGAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAA 7602 Query 29275 GGCGCAGAAGAAGGCAGACGCCGACCTGGAAGTC-CTCCAGCTCAACGAACAGGGGCGCC 29333 ||| |||||| | || ||| | | ||| ||| | || | |||||| | || |||| Sbjct 7603 GGCTCAGAAGGATGCTGACAGCCAGCTGACCGTCATTGCAAC-GAACGAAAAAGGCCGCC 7661 Query 29334 TGAAGAAAC 29342 || || ||| Sbjct 7662 TGGAGCAAC 7670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121933690001010