Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028667.1
Length=39593
Score E
Sequences producing significant alignments: (Bits) Value
seq3084660 134 3e-27
seq3087822 109 1e-19
seq3088451 98.7 2e-16
>seq3084660
Length=3030
Score = 134 bits (148), Expect = 3e-27
Identities = 133/168 (79%), Gaps = 3/168 (2%)
Strand=Plus/Minus
Query 28202 ATGCAGGAGGCGACTGGTAAGGCCGTTTCTGAAACCGTGGCCGAGTTCTCCAAGCTGGCC 28261
|||||||| ||||| || |||||||| || || || |||||||| |||||||||||
Sbjct 2198 ATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGGCT 2139
Query 28262 GATGATCCGGTCAAGGCGTC-GCAGCAGCTCAATGACCGCTATCACTACCTGACGGCCTC 28320
|| ||||||||||||||||| || || ||| || || | || ||||||||||| |||||
Sbjct 2138 GACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCCTC 2080
Query 28321 GGTGTACGAGCAGATCACTGCCCTGGAGAGGCAGGGGGA-CACGCTGG 28367
||| ||| ||| ||| || ||||||| ||| || || ||||||||
Sbjct 2079 GGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCTGG 2032
>seq3087822
Length=6084
Score = 109 bits (120), Expect = 1e-19
Identities = 114/147 (78%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 28202 ATGCAGGAGGCGACTGGTAAGGCCGTTTCTGAAACCGTGGCCGAGTTCTCCAAGCTGGCC 28261
||||||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct 5240 ATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGGCT 5181
Query 28262 GATGATCCGGTCAAGGCGT-CGCAGCAGCTCAATGACCGCTATCACTACCTGACGGCCTC 28320
|| |||||||||||||| | ||| || ||| ||||| | || || |||||||| |||||
Sbjct 5180 GACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCCTC 5122
Query 28321 GGTGTACGAGCAGATCACTGCCCTGGA 28347
||| || ||| || | || |||||
Sbjct 5121 GGTTTATTCGCAAATTTCAGCACTGGA 5095
Score = 84.2 bits (92), Expect = 5e-12
Identities = 142/203 (70%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 29144 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 29203
|||||||| || || ||||| |||| || ||| || ||||| || | | |||
Sbjct 4367 GACCAGGTGACGGCGGCCTACGAGGCCGAGATCACCGCACTGGAAGCCGTCAAGGGCAAG 4308
Query 29204 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 29263
| | || |||| || ||| ||||| |||||||||||||||||||| || | | |
Sbjct 4307 AAGACAACATCGGCCGCGCAGAGCATCCAGCTGGACCAGAAGATCGCCGACGC-ACGCGC 4249
Query 29264 AA-CATGGTCAAGGCGCAGAAGAAGGCAGACGCCGACCTGGAAGTCCTCCAGCTCAACGA 29322
| ||||||||||||||||||| | || ||| | | || ||||| || | |||||
Sbjct 4248 AGGCATGGTCAAGGCGCAGAAGGACGCTGACAGCCAGCTTGAAGTGCTGGCGACGAACGA 4189
Query 29323 ACAGGGGCGCCTGAAGAAACAGG 29345
||||||||| |||||||
Sbjct 4188 GACCGGGCGCCTGGCCAAACAGG 4166
>seq3088451
Length=13260
Score = 98.7 bits (108), Expect = 2e-16
Identities = 213/309 (69%), Gaps = 10/309 (3%)
Strand=Plus/Plus
Query 29039 GACTACAGGAACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTGCTGA-GCTA 29097
|||||| | |||||| || || | || ||||||||||| || ||| || | |||
Sbjct 7367 GACTACCGAAACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTG 7426
Query 29098 TGCGGACTATGTCGCGCAGCGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCG 29156
| ||||||| | ||| || | ||| | |||||| |||| | |||||| | || || |
Sbjct 7427 T-CGGACTACGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGG 7484
Query 29157 CAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCAC 29214
| || || ||| || ||| | || ||||||||| | || | |||| ||| ||
Sbjct 7485 CCGCGTACCAGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAAC 7542
Query 29215 GGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAA 29274
| |||| ||| | ||| |||||||| ||||||||||| || || | ||||||||
Sbjct 7543 GACGGCTCAGAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAA 7602
Query 29275 GGCGCAGAAGAAGGCAGACGCCGACCTGGAAGTC-CTCCAGCTCAACGAACAGGGGCGCC 29333
||| |||||| | || ||| | | ||| ||| | || | |||||| | || ||||
Sbjct 7603 GGCTCAGAAGGATGCTGACAGCCAGCTGACCGTCATTGCAAC-GAACGAAAAAGGCCGCC 7661
Query 29334 TGAAGAAAC 29342
|| || |||
Sbjct 7662 TGGAGCAAC 7670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 121933690001010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |