Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028695.2 Length=40491 Score E Sequences producing significant alignments: (Bits) Value seq2800887 86.0 2e-12 seq2572381 86.0 2e-12 seq2131327 86.0 2e-12 seq274481 86.0 2e-12 seq1139839 80.6 7e-11 >seq2800887 Length=235 Score = 86.0 bits (94), Expect = 2e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 6810 CTGCCGGAGGATTATGTCGACTCCCTACGCGCGACGTATCCGGAACAGCTTATCGACGCA 6869 |||||||| || || ||| ||| || | | | |||||| ||| | ||| || Sbjct 41 CTGCCGGATGACTACATCGCCTCTCTGATGGAGTCATATCCGCCCCAGTTGATCATGGCG 100 Query 6870 TACATCGATGGTGAGTTTGTTAACCTGACGTCCGGTACGGTCTACTACGCGTACAAGCGC 6929 ||| || | || |||| || ||||| ||||| || ||| | ||| || ||| | ||| Sbjct 101 TACCTCAAGGGCCAGTTCGTCAACCTTACGTCGGGAACGATTTACACGGCTTACGACCGC 160 Query 6930 CAGCGCAACGGCAGCCGGGAGACCATCCAGCCGGGCGAAACGCTCTACATCGGCCAGGAC 6989 ||| |||||| || || ||| | ||||| ||||| |||| | |||||| |||| Sbjct 161 AAGCTCAACGGGTGCTTCGACACCGTGCAGCCCGGCGAGCCGCTGTTCATCGGTATGGAC 220 Query 6990 TTCAACGTCGGCAAG 7004 ||||||||||| ||| Sbjct 221 TTCAACGTCGGGAAG 235 >seq2572381 Length=176 Score = 86.0 bits (94), Expect = 2e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 14133 CGACATCATCAGCAACGTCGACACGTCAAACGGCAACACCCGCATCCAGACCACCTGGCA 14192 ||||||||||||||||||| | || | |||||||| || ||| | ||||| || Sbjct 153 CGACATCATCAGCAACGTCCAGACCACCAACGGCAAGGAGCGTATCGAAACCACGCTCCA 94 Query 14193 GGCTGACTACACCTTCGGTCTGAAACTGAAGGGTTACTCCTGGGACGTTGCGAACGGCGG 14252 | ||||||||||| || ||| |||||||| ||| |||||||| | | |||||| Sbjct 93 AACCGACTACACCTTTGGCCTGGGCCTGAAGGGCTACACCTGGGACACCACCACCGGCGG 34 Query 14253 CAAATCACCACTGGACGCAGAGCTG 14277 ||| || ||| ||||| || ||| Sbjct 33 CAAGTCGCCAACCGACGCCGAACTG 9 >seq2131327 Length=127 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 6888 GTTAACCTGACGTCCGGTACGGTCTACTACGCGTACAAGCGCCAGCGCAACGGCAGCCGG 6947 || ||||||||||| || ||| | ||| |||||| | ||| ||| |||||| || Sbjct 127 GTCAACCTGACGTCGGGAACGATTTACACGGCGTACGACCGCAAGCTCAACGGATGCTTC 68 Query 6948 GAGACCATCCAGCCGGGCGAAACGCTCTACATCGGCCAGGACTTCAACGTCGGCAAGATG 7007 || || | ||||| ||||| |||| | |||||| ||||||||||||||| |||||| Sbjct 67 GACCCCGTGCAGCCCGGCGAGCCGCTGTTCATCGGTATGGACTTCAACGTCGGGAAGATG 8 Query 7008 GC 7009 || Sbjct 7 GC 6 >seq274481 Length=3169 Score = 86.0 bits (94), Expect = 2e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 6855 CAGCTTATCGACGCATACATCGATGGTGAGTTTGTTAACCTGACGTCCGGTACGGTCTAC 6914 ||||| ||| || ||| || | ||| |||| || |||||||| || || || ||||| Sbjct 1467 CAGCTGATCCTGGCCTACCTCAACGGTCAGTTCGTCAACCTGACATCGGGCTCGATCTAC 1408 Query 6915 TACGCGTACAAGCGCCAGCGCAACGGCAGCCGGGAGACCATCCAGCCGGGCGAAACGCTC 6974 || ||||| | ||| ||| ||| || || || | ||||| |||||| | || Sbjct 1407 CACTCGTACGACCGCAAGCACAATCAGTGCTTCGACACTGTGCAGCCTGGCGAACCCCTG 1348 Query 6975 TACATCGGCCAGGACTTCAACGTCGGCAAGATGGC 7009 | ||||| |||||||||||||||||||||||| Sbjct 1347 TTTATCGGGATGGACTTCAACGTCGGCAAGATGGC 1313 >seq1139839 Length=117 Score = 80.6 bits (88), Expect = 7e-11 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 6888 GTTAACCTGACGTCCGGTACGGTCTACTACGCGTACAAGCGCCAGCGCAACGGCAGCCGG 6947 || ||||||||||| || ||| | ||| |||||| | ||| ||| |||||| || Sbjct 117 GTCAACCTGACGTCGGGAACGATTTACACGGCGTACGACCGCAAGCTCAACGGATGCTTC 58 Query 6948 GAGACCATCCAGCCGGGCGAAACGCTCTACATCGGCCAGGACTTCAACGTCGGCAAG 7004 || ||| | ||||| ||||| |||| | |||||| ||||||||||||||| ||| Sbjct 57 GACACCGTGCAGCCCGGCGAGCCGCTGTTCATCGGTATGGACTTCAACGTCGGGAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124701897651646