Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq2317456 84.2 6e-12 seq144353 84.2 6e-12 >seq2317456 Length=139 Score = 84.2 bits (92), Expect = 6e-12 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 39540 ATAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCT 39599 ||||||| | ||| | |||||| | |||| || | || | ||||||||| || Sbjct 131 ATAGCCCACGGTCGGTATCCATTCTGTTTTCAAGCTGCGAAATACGCGCTCCATCGGTGC 72 Query 39600 GTTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACA 39655 |||||||||||||||||| || |||||||| ||||| | || ||||||| ||||| Sbjct 71 GTTATCCCAGCAGTTTCCTCGTCGACTCATGCTCTGGCGCATGCGGTATCGCCACA 16 Score = 84.2 bits (92), Expect = 6e-12 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 16915 ATAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCT 16974 ||||||| | ||| | |||||| | |||| || | || | ||||||||| || Sbjct 131 ATAGCCCACGGTCGGTATCCATTCTGTTTTCAAGCTGCGAAATACGCGCTCCATCGGTGC 72 Query 16975 GTTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACA 17030 |||||||||||||||||| || |||||||| ||||| | || ||||||| ||||| Sbjct 71 GTTATCCCAGCAGTTTCCTCGTCGACTCATGCTCTGGCGCATGCGGTATCGCCACA 16 >seq144353 Length=33745 Score = 84.2 bits (92), Expect = 6e-12 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 16915 ATAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCT 16974 ||||||| | ||| | |||||| | |||| || | || | ||||||||| || Sbjct 30584 ATAGCCCACGGTCGGTATCCATTCTGTTTTCAAGCTGCGAAATACGCGCTCCATCGGTGC 30643 Query 16975 GTTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACA 17030 |||||||||||||||||| || |||||||| ||||| | || ||||||| ||||| Sbjct 30644 GTTATCCCAGCAGTTTCCTCGTCGACTCATGCTCTGGCGCATGCGGTATCGCCACA 30699 Score = 84.2 bits (92), Expect = 6e-12 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 39540 ATAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCT 39599 ||||||| | ||| | |||||| | |||| || | || | ||||||||| || Sbjct 30584 ATAGCCCACGGTCGGTATCCATTCTGTTTTCAAGCTGCGAAATACGCGCTCCATCGGTGC 30643 Query 39600 GTTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACA 39655 |||||||||||||||||| || |||||||| ||||| | || ||||||| ||||| Sbjct 30644 GTTATCCCAGCAGTTTCCTCGTCGACTCATGCTCTGGCGCATGCGGTATCGCCACA 30699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127312890836600