Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028698.1 Length=41868 Score E Sequences producing significant alignments: (Bits) Value seq274481 84.2 6e-12 >seq274481 Length=3169 Score = 84.2 bits (92), Expect = 6e-12 Identities = 164/236 (69%), Gaps = 16/236 (7%) Strand=Plus/Plus Query 33402 CCTGACCACATCCGGGGTGTCGAACATATCCACCAGCTCGGCTACCGCGTGCCAGACATA 33461 ||||| || |||||| |||||| | ||||||||||||| | |||| | | || | Sbjct 1228 CCTGATCATATCCGGCGTGTCGTAGCCATCCACCAGCTCGTCAGCCGCCCGG--GGCAAA 1285 Query 33462 C--TCACGCTGAACGTATACGGTGCTAGCC---ATATGCCCGACGTTGAAGTCCTGACCG 33516 | || |||| |||| |||| ||||| || | ||||||||||||||| ||| Sbjct 1286 CCGTCTCGCTTGACGTG---GGTGATAGCCGCCATCTTGCCGACGTTGAAGTCCATCCCG 1342 Query 33517 ATATACAGCGTTTCTCCAGGTTGTATAGTCTC--TCGACTG-CTGTTCTTGCGTCGGTCG 33573 ||| |||| | ||| ||||| || | ||| || |||| ||| |||| |||||| Sbjct 1343 ATAAACAGGGGTTCGCCAGGCTGCACAGTGTCGAAGCACTGATTGTGCTTG---CGGTCG 1399 Query 33574 TAAGCATAATACACGCTGCCGGATGTCAGGTTGACAAATTCACCATCGATGTAGGC 33629 || | | || | ||| |||||||||||||| || | ||| | || |||||| Sbjct 1400 TACGAGTGGTAGATCGAGCCCGATGTCAGGTTGACGAACTGACCGTTGAGGTAGGC 1455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128946688225060