Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq295506 89.7 1e-13 >seq295506 Length=3618 Score = 89.7 bits (98), Expect = 1e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 8 AACCGGACTGGGAGGCCATCGAGACG-GCATACCGGGCCGGAGTGATGTCTCTCCGTGAA 66 |||| ||||||||||| ||||| ||| || ||||||||||| || | ||| | ||||| Sbjct 2292 AACCCGACTGGGAGGCAATCGA-ACGTGCCTACCGGGCCGGTCTGCTTTCTATTCGTGAG 2234 Query 67 ATTGCGTCACATCATGGTATTAGTGAAGGTGCTATCCGCAAGCGCGCAAAGCGTGATGAC 126 || || ||| || || || | | | || || ||| ||||||||| ||||| || | Sbjct 2233 ATCGCATCAACCCAAGGCATCACTCACGGAGCAATCAACAAGCGCGCCAAGCGGGACGGA 2174 Query 127 TGGTCCCGTGATCTTAACGCCAGGATTCAGCAAAAGGCTGATGATCTGGTACGCAAAC 184 ||| || || || || || | ||| ||| ||||||||| |||||| ||||| Sbjct 2173 TGGGAGCGAGACCTCAAGGCGAAGATCCAGGCTAAGGCTGATTCGCTGGTATCCAAAC 2116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125469474160564