Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq308140 158 4e-34 seq2939440 149 2e-31 seq2939619 131 5e-26 seq2613054 104 7e-18 seq1566616 89.7 2e-13 >seq308140 Length=1303 Score = 158 bits (174), Expect = 4e-34 Identities = 210/290 (72%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 40124 CCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATC--GAAGTCGA 40181 ||||| || |||| ||||| ||| || | |||||| || ||| |||||||| Sbjct 300 CCGTATTTTTCGGCCACGTATTCGATCACGCGGTCGCGAC--CGTCCATGCAGAAGTCGA 243 Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241 ||| | |||||||||||| || || || |||||||||||||| ||||| | || ||| Sbjct 242 CGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCGT 183 Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301 ||||| || || |||||||||||| | || || |||||||||||||| ||| Sbjct 182 ATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACCGGCACCCG 123 Query 40302 AGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40361 | || || || || || ||| ||||||||| ||| ||||| ||| ||||| | Sbjct 122 AACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAAGTCCATTA 63 Query 40362 CGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411 ||| ||||||||| ||||| ||||||||||| || || || | |||| Sbjct 62 CGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13 >seq2939440 Length=415 Score = 149 bits (164), Expect = 2e-31 Identities = 186/253 (74%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 40124 CCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAA--GTCGA 40181 ||||| ||||||| |||||| ||| || | |||| |||| ||| || ||||| Sbjct 252 CCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCG--GCCGTCCATGCAAAAGTCGA 195 Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241 ||| | |||||||||||| || || || |||||||||||||||||||| | || | | Sbjct 194 CGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTCAT 135 Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301 ||||| || || |||||||| ||| | ||| || |||||||||||||| | | Sbjct 134 ATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCACCTG 75 Query 40302 AGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40361 | || || |||||||| ||| |||||||| | ||||||||| ||| ||||| | Sbjct 74 ACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15 Query 40362 CGACCAGGAAGTA 40374 ||| ||||||||| Sbjct 14 CGATCAGGAAGTA 2 >seq2939619 Length=415 Score = 131 bits (144), Expect = 5e-26 Identities = 182/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 40124 CCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATC--GAAGTCGA 40181 ||||||||||||| ||||| ||| ||| |||||| || ||| |||||||| Sbjct 252 CCGTACTTCTCGGCCACGTATTCGATCACCCGATCGCGAC--CGTCCATGCAGAAGTCGA 195 Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241 ||| | |||||||||||| || || || ||||||||||| || ||||| | || | | Sbjct 194 CGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTCAT 135 Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301 |||| || || |||||||||||| | |||||| |||| ||| || || | | Sbjct 134 ATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGCACCTG 75 Query 40302 AGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40361 | || || || ||||| ||| |||||||| | ||||||||| ||| ||||| | Sbjct 74 ACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15 Query 40362 CGACCAGGAAGTA 40374 ||| ||||||||| Sbjct 14 CGATCAGGAAGTA 2 >seq2613054 Length=182 Score = 104 bits (114), Expect = 7e-18 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 40216 CAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCA 40275 ||||||||| ||||| | || ||| ||||| || || |||||||||||| | Sbjct 182 CAGGAACCGTTCGAACAGCAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCAC 123 Query 40276 GTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTC 40335 ||||| |||||||| ||||| |||| || || || || || || ||||||||| Sbjct 122 ATAGGCCACCAGCGACCCGGCACCCGATCCACGGCCTGGGCCTACGGGCACGCCGTTGCT 63 Query 40336 CTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGAT 40395 ||||||||| ||| ||||| |||| ||||||||| ||||| ||||||||||| Sbjct 62 CTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGTAACCGGGGAACCCCATCTGGAT 3 >seq1566616 Length=125 Score = 89.7 bits (98), Expect = 2e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||| ||| | |||||||||||| || || || |||||||||||||| ||||| | Sbjct 105 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 46 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267 || ||| ||||| || || |||||||||||| Sbjct 45 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATC 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154523323945914