Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
seq308140 158 4e-34
seq2939440 149 2e-31
seq2939619 131 5e-26
seq2613054 104 7e-18
seq1566616 89.7 2e-13
>seq308140
Length=1303
Score = 158 bits (174), Expect = 4e-34
Identities = 210/290 (72%), Gaps = 4/290 (1%)
Strand=Plus/Minus
Query 40124 CCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATC--GAAGTCGA 40181
||||| || |||| ||||| ||| || | |||||| || ||| ||||||||
Sbjct 300 CCGTATTTTTCGGCCACGTATTCGATCACGCGGTCGCGAC--CGTCCATGCAGAAGTCGA 243
Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241
||| | |||||||||||| || || || |||||||||||||| ||||| | || |||
Sbjct 242 CGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCGT 183
Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301
||||| || || |||||||||||| | || || |||||||||||||| |||
Sbjct 182 ATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACCGGCACCCG 123
Query 40302 AGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40361
| || || || || || ||| ||||||||| ||| ||||| ||| ||||| |
Sbjct 122 AACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAAGTCCATTA 63
Query 40362 CGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411
||| ||||||||| ||||| ||||||||||| || || || | ||||
Sbjct 62 CGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13
>seq2939440
Length=415
Score = 149 bits (164), Expect = 2e-31
Identities = 186/253 (74%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 40124 CCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAA--GTCGA 40181
||||| ||||||| |||||| ||| || | |||| |||| ||| || |||||
Sbjct 252 CCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCG--GCCGTCCATGCAAAAGTCGA 195
Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241
||| | |||||||||||| || || || |||||||||||||||||||| | || | |
Sbjct 194 CGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTCAT 135
Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301
||||| || || |||||||| ||| | ||| || |||||||||||||| | |
Sbjct 134 ATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCACCTG 75
Query 40302 AGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40361
| || || |||||||| ||| |||||||| | ||||||||| ||| ||||| |
Sbjct 74 ACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15
Query 40362 CGACCAGGAAGTA 40374
||| |||||||||
Sbjct 14 CGATCAGGAAGTA 2
>seq2939619
Length=415
Score = 131 bits (144), Expect = 5e-26
Identities = 182/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 40124 CCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATC--GAAGTCGA 40181
||||||||||||| ||||| ||| ||| |||||| || ||| ||||||||
Sbjct 252 CCGTACTTCTCGGCCACGTATTCGATCACCCGATCGCGAC--CGTCCATGCAGAAGTCGA 195
Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241
||| | |||||||||||| || || || ||||||||||| || ||||| | || | |
Sbjct 194 CGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTCAT 135
Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301
|||| || || |||||||||||| | |||||| |||| ||| || || | |
Sbjct 134 ATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGCACCTG 75
Query 40302 AGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40361
| || || || ||||| ||| |||||||| | ||||||||| ||| ||||| |
Sbjct 74 ACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15
Query 40362 CGACCAGGAAGTA 40374
||| |||||||||
Sbjct 14 CGATCAGGAAGTA 2
>seq2613054
Length=182
Score = 104 bits (114), Expect = 7e-18
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 40216 CAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCA 40275
||||||||| ||||| | || ||| ||||| || || |||||||||||| |
Sbjct 182 CAGGAACCGTTCGAACAGCAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCAC 123
Query 40276 GTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTC 40335
||||| |||||||| ||||| |||| || || || || || || |||||||||
Sbjct 122 ATAGGCCACCAGCGACCCGGCACCCGATCCACGGCCTGGGCCTACGGGCACGCCGTTGCT 63
Query 40336 CTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGAT 40395
||||||||| ||| ||||| |||| ||||||||| ||||| |||||||||||
Sbjct 62 CTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGTAACCGGGGAACCCCATCTGGAT 3
>seq1566616
Length=125
Score = 89.7 bits (98), Expect = 2e-13
Identities = 76/94 (81%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233
|||||||| ||| | |||||||||||| || || || |||||||||||||| ||||| |
Sbjct 105 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 46
Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267
|| ||| ||||| || || ||||||||||||
Sbjct 45 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATC 12
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 154523323945914
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |