Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value seq3066367 118 7e-22 seq2899236 95.1 8e-15 seq2606047 87.8 1e-12 seq261985 87.8 1e-12 seq2421911 86.0 4e-12 >seq3066367 Length=1492 Score = 118 bits (130), Expect = 7e-22 Identities = 132/174 (76%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 96682 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 96741 ||||| ||||| ||||| |||| |||||||| || |||||||| || || |||| || Sbjct 919 GTTGGCCTTGATCAGGCCGGTGATCACATCCACCGACGGCCGCTGGGTGGCGAGGATCAG 978 Query 96742 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCT 96799 || || ||||| || || |||||||||||||| || | || ||| | |||| | Sbjct 979 GTGGATCCCGGCCGCACGGGCCTTCTGGGCGATACGCGCGATCAGTT--CTTCGA---CC 1033 Query 96800 TTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 96853 |||||| | || |||||| | ||| |||| |||||||||||| ||||||||| Sbjct 1034 TTCTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGACCACCACCACGATG 1087 >seq2899236 Length=330 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 96965 TCGGTGACCACCGGCTGCAAA--AGGTGGGGGATACCGTTGTACGGGGTGAGTTCCACCA 97022 |||||||||||||| ||| | ||||| || || || | ||| | ||||||| || Sbjct 29 TCGGTGACCACCGG--GCAGAGCAGGTGCGGAATGCCTTCGTAGATCGACAGTTCCAACA 86 Query 97023 TCTTCGGGTCGATCATGATGAGTTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAA 97082 ||||||||||||||||||| || ||| | ||| || | | | | || || || | Sbjct 87 TCTTCGGGTCGATCATGATCAGCTTGGCGTCATCCGGGCCAGATTTGAACAGGATCGACA 146 Query 97083 CCAGCATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGGT 97142 | ||||| ||| | | || ||||| || ||||||| || || ||||||| || Sbjct 147 GGATCATCGCGTTCACGCCCACCGATTTACCGGAACCGGTGGTACCGGCTACCAGCAAGT 206 Query 97143 GCGGCATTTTGGCCAGGT 97160 |||||||||| ||||||| Sbjct 207 GCGGCATTTTCGCCAGGT 224 >seq2606047 Length=181 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 96682 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 96741 ||||| ||||| | ||| |||| |||||||| || |||||||| ||||| |||| | Sbjct 40 GTTGGCCTTGATCAAGCCGGTGATCACATCCACCGACGGCCGCTGGGTCGCGAGGATCAA 99 Query 96742 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCG 96777 ||||||||||| || |||||||| |||||||| || Sbjct 100 GTGAATACCGGCCGCACGCGCCTTTTGGGCGATACG 135 >seq261985 Length=1168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 96682 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 96741 ||||| ||||| | ||| |||| ||||||||| || |||||||| ||||| |||| | Sbjct 142 GTTGGCCTTGATCAAGCCGGTGATTACATCCACCGACGGCCGCTGGGTCGCGAGGATCAA 83 Query 96742 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCG 96777 ||||||||||| || || ||||| |||||||| || Sbjct 82 GTGAATACCGGCCGCACGGGCCTTTTGGGCGATACG 47 >seq2421911 Length=154 Score = 86.0 bits (94), Expect = 4e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 96676 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 96735 ||| | ||||| ||||| || || |||| || ||||| || |||||||| |||||||| Sbjct 13 CGGGATGTTGGCCTTGATCAGACCCGTGATCACGTCCACCGATGGCCGCTGAGTCGCCAG 72 Query 96736 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCG 96777 || | ||||||||||| || || || ||||||||||| || Sbjct 73 GATCAAGTGAATACCGGCCGCCCGGGCTTTCTGGGCGATACG 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338014275821031