Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq240294 93.3 4e-14 seq501696 84.2 2e-11 >seq240294 Length=15375 Score = 93.3 bits (102), Expect = 4e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 27072 GTCCCTCCAATACGCCTTCTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGT 27131 ||||| | || ||||| ||||||||||||||||||| | ||||||||||||| ||||| Sbjct 3674 GTCCCCCTAACACGCCGGTTTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGT 3733 Query 27132 CGTGGGTTCGAATCCTACAGTCGGCACCATA 27162 | |||||||| |||| | |||||||||| Sbjct 3734 CCCGGGTTCGACTCCTGGTGCCGGCACCATA 3764 >seq501696 Length=102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 27092 TAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTACAG 27151 |||||||||||||||||| | ||||||||||||| |||||| |||||||| |||| | Sbjct 71 TAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACTCCTGGTG 12 Query 27152 TCGGCACCATA 27162 |||||||||| Sbjct 11 CCGGCACCATA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499758549683760