Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq308140 136 1e-27 seq2939440 123 8e-24 seq2939619 114 4e-21 seq2908808 91.5 5e-14 seq2955694 84.2 7e-12 seq2832633 84.2 7e-12 >seq308140 Length=1303 Score = 136 bits (150), Expect = 1e-27 Identities = 207/292 (71%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 39030 GCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTC-ATC--GAAGTC 39086 |||||| || |||| ||||| ||||||| | | ||||| ||| || |||||| Sbjct 301 GCCGTATTTTTCGGCCACGTATTCGATCACGCGGTC---GCGACCGTCCATGCAGAAGTC 245 Query 39087 GATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCC 39146 || ||| | |||||||||||| || || || |||||||||||||| ||||| | || | Sbjct 244 GACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTC 185 Query 39147 GTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGC 39206 || | ||||| |||||||||||| | | || || ||||||| || || | Sbjct 184 GTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACCGGCACC 125 Query 39207 AGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGC 39266 || || || || ||||| ||| ||||||||| ||| ||||| ||| ||||| Sbjct 124 CGAACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAAGTCCAT 65 Query 39267 GACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 |||| |||||||| ||||||||||||||| | || || || | |||| Sbjct 64 TACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13 Score = 87.8 bits (96), Expect = 6e-13 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174 || |||||||| | |||||||| ||||| |||||||| ||||| || | ||| || Sbjct 1201 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCCCGACGCAGCATGTCCGCACC 1142 Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234 |||||||||||| ||||||| | ||| || || | |||||| || || || | ||| Sbjct 1141 ACCGAGGGTGTAACCGGCCATTACCTGGGCGATCTGCATCACCTGTTCTTGATACAGGAT 1082 Query 38235 GAGCCCGAAGGTCGGGTCCAG 38255 || ||| |||| || |||| Sbjct 1081 GATGCCGTAGGTAGGCGCCAG 1061 >seq2939440 Length=415 Score = 123 bits (136), Expect = 8e-24 Identities = 181/254 (71%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 39030 GCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAA--GTCG 39087 |||||| ||||||| |||||| ||||||| | | |||| || ||| || |||| Sbjct 253 GCCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCGGC--CGTCCATGCAAAAGTCG 196 Query 39088 ATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCG 39147 | ||| | ||||||||||||||| || || |||||||||||||||||||| | || | Sbjct 195 ACGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTCA 136 Query 39148 TGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCA 39207 | | ||||| |||||||| ||| | |||| || ||||||| || || | Sbjct 135 TATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCACCT 76 Query 39208 GAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCG 39267 || || || ||||| || ||| |||||||| | ||| ||||| ||| ||||| Sbjct 75 GACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATC 16 Query 39268 ACGACGAGGAAGTA 39281 |||| |||||||| Sbjct 15 ACGATCAGGAAGTA 2 >seq2939619 Length=415 Score = 114 bits (126), Expect = 4e-21 Identities = 180/255 (71%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 39030 GCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTC-ATC--GAAGTC 39086 |||||||||||||| ||||| |||||| | | ||||| ||| || |||||| Sbjct 253 GCCGTACTTCTCGGCCACGTATTCGATCACC---CGATCGCGACCGTCCATGCAGAAGTC 197 Query 39087 GATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCC 39146 || ||| | |||||||||||| ||||| || ||||||||||| || ||||| | || | Sbjct 196 GACGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTC 137 Query 39147 GTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGC 39206 | | ||||| |||||||||||| | |||| || ||| |||||| || | Sbjct 136 ATATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGCACC 77 Query 39207 AGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGC 39266 || || || || || || ||| |||||||| | ||| ||||| ||| ||||| Sbjct 76 TGACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCAT 17 Query 39267 GACGACGAGGAAGTA 39281 |||| |||||||| Sbjct 16 CACGATCAGGAAGTA 2 >seq2908808 Length=346 Score = 91.5 bits (100), Expect = 5e-14 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 38118 CTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACC 38177 |||||||| |||||||||| ||||| |||||||||||||| || | ||| || || Sbjct 241 CTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCGCGACGCAGCATGTCTGCGCCGCC 182 Query 38178 GAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 38237 ||||||||| || |||| | ||| || || | |||||| || || || | ||||| Sbjct 181 GAGGGTGTAACCCGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGATGAT 122 Query 38238 CCCGAAGGTCGGGTCCAG 38255 ||| ||||||| |||| Sbjct 121 GCCGTAGGTCGGTGCCAG 104 >seq2955694 Length=463 Score = 84.2 bits (92), Expect = 7e-12 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174 || |||||||| | ||||| ||||| || |||||||||||||| | | ||| || Sbjct 235 CTGCTTGGCCATTTCTTCGGGTTTCTTTTTACCCATGGCGCGACGCAACATGTCCGCGCC 176 Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234 ||||||||||| || |||| || ||| || || | |||||| ||||| || | ||| Sbjct 175 GCCGAGGGTGTAGCCCGCCATGACCTGGGCAATCTGCATCACCTGTTCCTGATACAGGAT 116 Query 38235 GAGCCCGAAGGTCGGGTCCAG 38255 || ||| |||| || |||| Sbjct 115 GATGCCGTAGGTTGGCGCCAG 95 >seq2832633 Length=255 Score = 84.2 bits (92), Expect = 7e-12 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174 || |||||||| | |||||||| ||||| |||||||||||||| | | ||| || Sbjct 21 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCGCGACGCAACATGTCCGCGCC 80 Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234 ||||||||||| ||||||| | ||| || || | |||||| || || || | ||| Sbjct 81 GCCGAGGGTGTAACCGGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGAT 140 Query 38235 GAGCCCGAAGGTCGGGTCCAG 38255 || ||| |||| || |||| Sbjct 141 GATGCCGTAGGTTGGCGCCAG 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153857474444202