Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028892.1
Length=49949
Score E
Sequences producing significant alignments: (Bits) Value
seq308140 136 1e-27
seq2939440 123 8e-24
seq2939619 114 4e-21
seq2908808 91.5 5e-14
seq2955694 84.2 7e-12
seq2832633 84.2 7e-12
>seq308140
Length=1303
Score = 136 bits (150), Expect = 1e-27
Identities = 207/292 (71%), Gaps = 6/292 (2%)
Strand=Plus/Minus
Query 39030 GCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTC-ATC--GAAGTC 39086
|||||| || |||| ||||| ||||||| | | ||||| ||| || ||||||
Sbjct 301 GCCGTATTTTTCGGCCACGTATTCGATCACGCGGTC---GCGACCGTCCATGCAGAAGTC 245
Query 39087 GATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCC 39146
|| ||| | |||||||||||| || || || |||||||||||||| ||||| | || |
Sbjct 244 GACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTC 185
Query 39147 GTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGC 39206
|| | ||||| |||||||||||| | | || || ||||||| || || |
Sbjct 184 GTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACCGGCACC 125
Query 39207 AGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGC 39266
|| || || || ||||| ||| ||||||||| ||| ||||| ||| |||||
Sbjct 124 CGAACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAAGTCCAT 65
Query 39267 GACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318
|||| |||||||| ||||||||||||||| | || || || | ||||
Sbjct 64 TACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13
Score = 87.8 bits (96), Expect = 6e-13
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174
|| |||||||| | |||||||| ||||| |||||||| ||||| || | ||| ||
Sbjct 1201 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCCCGACGCAGCATGTCCGCACC 1142
Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234
|||||||||||| ||||||| | ||| || || | |||||| || || || | |||
Sbjct 1141 ACCGAGGGTGTAACCGGCCATTACCTGGGCGATCTGCATCACCTGTTCTTGATACAGGAT 1082
Query 38235 GAGCCCGAAGGTCGGGTCCAG 38255
|| ||| |||| || ||||
Sbjct 1081 GATGCCGTAGGTAGGCGCCAG 1061
>seq2939440
Length=415
Score = 123 bits (136), Expect = 8e-24
Identities = 181/254 (71%), Gaps = 4/254 (2%)
Strand=Plus/Minus
Query 39030 GCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAA--GTCG 39087
|||||| ||||||| |||||| ||||||| | | |||| || ||| || ||||
Sbjct 253 GCCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCGGC--CGTCCATGCAAAAGTCG 196
Query 39088 ATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCG 39147
| ||| | ||||||||||||||| || || |||||||||||||||||||| | || |
Sbjct 195 ACGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTCA 136
Query 39148 TGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCA 39207
| | ||||| |||||||| ||| | |||| || ||||||| || || |
Sbjct 135 TATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCACCT 76
Query 39208 GAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCG 39267
|| || || ||||| || ||| |||||||| | ||| ||||| ||| |||||
Sbjct 75 GACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATC 16
Query 39268 ACGACGAGGAAGTA 39281
|||| ||||||||
Sbjct 15 ACGATCAGGAAGTA 2
>seq2939619
Length=415
Score = 114 bits (126), Expect = 4e-21
Identities = 180/255 (71%), Gaps = 6/255 (2%)
Strand=Plus/Minus
Query 39030 GCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTC-ATC--GAAGTC 39086
|||||||||||||| ||||| |||||| | | ||||| ||| || ||||||
Sbjct 253 GCCGTACTTCTCGGCCACGTATTCGATCACC---CGATCGCGACCGTCCATGCAGAAGTC 197
Query 39087 GATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCC 39146
|| ||| | |||||||||||| ||||| || ||||||||||| || ||||| | || |
Sbjct 196 GACGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTC 137
Query 39147 GTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGC 39206
| | ||||| |||||||||||| | |||| || ||| |||||| || |
Sbjct 136 ATATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGCACC 77
Query 39207 AGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGC 39266
|| || || || || || ||| |||||||| | ||| ||||| ||| |||||
Sbjct 76 TGACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCAT 17
Query 39267 GACGACGAGGAAGTA 39281
|||| ||||||||
Sbjct 16 CACGATCAGGAAGTA 2
>seq2908808
Length=346
Score = 91.5 bits (100), Expect = 5e-14
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 38118 CTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACC 38177
|||||||| |||||||||| ||||| |||||||||||||| || | ||| || ||
Sbjct 241 CTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCGCGACGCAGCATGTCTGCGCCGCC 182
Query 38178 GAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 38237
||||||||| || |||| | ||| || || | |||||| || || || | |||||
Sbjct 181 GAGGGTGTAACCCGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGATGAT 122
Query 38238 CCCGAAGGTCGGGTCCAG 38255
||| ||||||| ||||
Sbjct 121 GCCGTAGGTCGGTGCCAG 104
>seq2955694
Length=463
Score = 84.2 bits (92), Expect = 7e-12
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174
|| |||||||| | ||||| ||||| || |||||||||||||| | | ||| ||
Sbjct 235 CTGCTTGGCCATTTCTTCGGGTTTCTTTTTACCCATGGCGCGACGCAACATGTCCGCGCC 176
Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234
||||||||||| || |||| || ||| || || | |||||| ||||| || | |||
Sbjct 175 GCCGAGGGTGTAGCCCGCCATGACCTGGGCAATCTGCATCACCTGTTCCTGATACAGGAT 116
Query 38235 GAGCCCGAAGGTCGGGTCCAG 38255
|| ||| |||| || ||||
Sbjct 115 GATGCCGTAGGTTGGCGCCAG 95
>seq2832633
Length=255
Score = 84.2 bits (92), Expect = 7e-12
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174
|| |||||||| | |||||||| ||||| |||||||||||||| | | ||| ||
Sbjct 21 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCGCGACGCAACATGTCCGCGCC 80
Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234
||||||||||| ||||||| | ||| || || | |||||| || || || | |||
Sbjct 81 GCCGAGGGTGTAACCGGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGAT 140
Query 38235 GAGCCCGAAGGTCGGGTCCAG 38255
|| ||| |||| || ||||
Sbjct 141 GATGCCGTAGGTTGGCGCCAG 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 153857474444202
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |