Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq3088503 122 2e-23 >seq3088503 Length=21467 Score = 122 bits (134), Expect = 2e-23 Identities = 293/443 (66%), Gaps = 3/443 (1%) Strand=Plus/Minus Query 2378 TAGGCGGAATGGGTAATGCTCGAAGGGGTAGAAAAATAAGTAATCCGATATTGTTTTTGG 2437 ||||| ||||| ||||| || || || || || || || | || | | || || Sbjct 10648 TAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAGTAGGTTTTGCGCCACTTCTTGTGC 10589 Query 2438 CTTGCCATACCCGCAGCAACTTTGCGGATTTCTTCAAAGCGGTTTACCCAAAAGATTTCA 2497 | ||||| |||| ||| || ||| | ||| ||||| | ||| |||| ||| Sbjct 10588 ATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCAAACTTGAACGTCCAGAAGAATTCG 10529 Query 2498 TCAAAATAGAGATTGCCGTGGTAAGACTGTGCCGTTTTCGAGTTTGTACCCAAGAAAATT 2557 || || |||| |||||||||||| ||| || || || || ||||| | ||||| Sbjct 10528 TCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTACGCGCATTGGTACCGAGGAAAAAC 10469 Query 2558 AGTTGAGACTCGTTCGGCAAGGTAATGGTTTCGCCTTTTAGCTCCACATCGGCAACCCGT 2617 || | | |||| ||||| |||| || || | ||||| ||| || |||| Sbjct 10468 AGCTCGGCGCCGTTGGGCAATACGATGGGATCCCCCGTCAGCTCGACACCGATAACCTCA 10409 Query 2618 TTGGCGTATGCCACAATATAGGCTCTAAATTGCAATGCCTGTTTTTTCGAGGCGGAAATA 2677 ||| ||||| || || | | ||| | | || || |||||||| ||||| | Sbjct 10408 CGGGCAAATGCCTGGATGTACCCGCGAAACAGATAGGCTTGGTTTTTCGATGCGGACAGG 10349 Query 2678 AAAATCTGATTTCTACCGGTTACTAACGCATCAACTAACGCCTCGTGAGCAAAATAATAA 2737 || |||||||| | |||||| | | |||||||| ||||||||| | ||||| ||||| Sbjct 10348 AAGATCTGATTGCGCCCGGTTTCCAGCGCATCAAGAAACGCCTCGCGGGCAAAGTAATAG 10289 Query 2738 GTCGCTCCAATTTGACGACTTTTAAGAATATTGCGGATTCGATGAGTCAGCCCAGCTTCG 2797 ||||| || || || || ||||| || || ||| | || ||| | ||||| | Sbjct 10288 GTCGCGCCGATCTGCCGGCTTTTGAGGATGACGCGAGTCCGTTGATT---GCCAGCCCGG 10232 Query 2798 TGCCATTTTTTCTGATAATGGAA 2820 | ||| | |||||| || | ||| Sbjct 10231 TACCAGTCTTTCTGGTAGTCGAA 10209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110130274528532