Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028906.1
Length=75933
Score E
Sequences producing significant alignments: (Bits) Value
seq2830298 123 1e-23
seq169646 120 1e-22
seq2744214 93.3 2e-14
seq1642876 87.8 8e-13
>seq2830298
Length=253
Score = 123 bits (136), Expect = 1e-23
Identities = 181/254 (71%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 66619 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCG--CTCGGTGTG 66676
||| | | ||||||| |||||| ||||||| ||||| |||||| ||| || || ||
Sbjct 1 CGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCC--GGCAAACTGGGCGTC 58
Query 66677 GACCTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTT 66736
|| | ||| |||| |||| ||||| || ||||| ||||| ||||| || |||
Sbjct 59 AACGTTGACGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAAGCCCTCGAAATCACC 118
Query 66737 GACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTG 66796
||| | || || || || | | | |||| || |||||||||||||| |||
Sbjct 119 GACATGCTGGTGCGTTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTG 178
Query 66797 GTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGC 66856
|| ||| || || |||||||||| || || |||| ||||| |||||||| || |||
Sbjct 179 GTACCGAAGGCAGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGC 238
Query 66857 CTCATGTCACAGGC 66870
|| ||||| |||||
Sbjct 239 CTGATGTCCCAGGC 252
>seq169646
Length=525
Score = 120 bits (132), Expect = 1e-22
Identities = 237/350 (68%), Gaps = 3/350 (1%)
Strand=Plus/Minus
Query 66683 GACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTC 66742
||| |||| |||| ||||| || ||||| ||||| |||||||| ||| ||| |
Sbjct 357 GACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATG 298
Query 66743 CTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCG 66802
| || || || | | | |||| || ||||||||||| ||| |||| |||
Sbjct 297 TTGGTGCGCTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCTTGGTACCG 238
Query 66803 CGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATG 66862
|| || |||||||||| || || |||| ||||| |||||||| || || || |||
Sbjct 237 AAAGCTGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGTCTGATG 178
Query 66863 TCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGG 66922
|| ||||| |||| || | | || | |||| | | ||||| ||| | |||
Sbjct 177 TCCCAGGCGCTGCGTAAAATTCCCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTC 118
Query 66923 GTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACG 66982
|||||||| | || |||||||||| || | | ||||| || ||||| ||
Sbjct 117 ATCAACCAGATCCGTATGAAGATCGGCGTAATGTTCGGCAGCCCG---GAAACCACTACC 61
Query 66983 GGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCG 67032
|| || || || ||| ||||||||| || |||||| |||| |||| ||
Sbjct 60 GGTGGTAACGCGCTGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCG 11
>seq2744214
Length=211
Score = 93.3 bits (102), Expect = 2e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 66471 CCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66530
|||| |||||| | | ||||||| ||| || ||||| || || || | |||||
Sbjct 3 CCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 62
Query 66531 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66590
| || ||||||||||| || |||||||| || || | |||||| ||| | | | |
Sbjct 63 TTGTCGAAATCTACGGTCCTGAATCTTCCGGTAAAACTACTCTGACTCTGTCGGTGATTG 122
Query 66591 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66650
|| | ||||| || || | || | ||| | | ||||||| |||||| ||||||| |
Sbjct 123 CCCAGGCGCAAAAAATGGGCGCCACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGATC 182
Query 66651 CTGAGTACGCC 66661
|||| ||||||
Sbjct 183 CTGAATACGCC 193
>seq1642876
Length=127
Score = 87.8 bits (96), Expect = 8e-13
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 66771 TCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGG 66830
|||| || ||||||||||| |||||||| ||| || || | |||||||| || || |
Sbjct 107 TCGTGGTCGACTCCGTGGCAGCCCTGGTACCGAAAGCTGAAATTGAAGGCGAAATGGGCG 48
Query 66831 ACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCG 66876
||| ||||| |||||||| || ||||| ||||| ||||| ||||
Sbjct 47 ACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCG 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 233719221300474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |