Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq2830298 123 1e-23 seq169646 120 1e-22 seq2744214 93.3 2e-14 seq1642876 87.8 8e-13 >seq2830298 Length=253 Score = 123 bits (136), Expect = 1e-23 Identities = 181/254 (71%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 66619 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCG--CTCGGTGTG 66676 ||| | | ||||||| |||||| ||||||| ||||| |||||| ||| || || || Sbjct 1 CGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCC--GGCAAACTGGGCGTC 58 Query 66677 GACCTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTT 66736 || | ||| |||| |||| ||||| || ||||| ||||| ||||| || ||| Sbjct 59 AACGTTGACGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAAGCCCTCGAAATCACC 118 Query 66737 GACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTG 66796 ||| | || || || || | | | |||| || |||||||||||||| ||| Sbjct 119 GACATGCTGGTGCGTTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTG 178 Query 66797 GTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGC 66856 || ||| || || |||||||||| || || |||| ||||| |||||||| || ||| Sbjct 179 GTACCGAAGGCAGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGC 238 Query 66857 CTCATGTCACAGGC 66870 || ||||| ||||| Sbjct 239 CTGATGTCCCAGGC 252 >seq169646 Length=525 Score = 120 bits (132), Expect = 1e-22 Identities = 237/350 (68%), Gaps = 3/350 (1%) Strand=Plus/Minus Query 66683 GACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTC 66742 ||| |||| |||| ||||| || ||||| ||||| |||||||| ||| ||| | Sbjct 357 GACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATG 298 Query 66743 CTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCG 66802 | || || || | | | |||| || ||||||||||| ||| |||| ||| Sbjct 297 TTGGTGCGCTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCTTGGTACCG 238 Query 66803 CGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATG 66862 || || |||||||||| || || |||| ||||| |||||||| || || || ||| Sbjct 237 AAAGCTGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGTCTGATG 178 Query 66863 TCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGG 66922 || ||||| |||| || | | || | |||| | | ||||| ||| | ||| Sbjct 177 TCCCAGGCGCTGCGTAAAATTCCCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTC 118 Query 66923 GTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACG 66982 |||||||| | || |||||||||| || | | ||||| || ||||| || Sbjct 117 ATCAACCAGATCCGTATGAAGATCGGCGTAATGTTCGGCAGCCCG---GAAACCACTACC 61 Query 66983 GGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCG 67032 || || || || ||| ||||||||| || |||||| |||| |||| || Sbjct 60 GGTGGTAACGCGCTGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCG 11 >seq2744214 Length=211 Score = 93.3 bits (102), Expect = 2e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 66471 CCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66530 |||| |||||| | | ||||||| ||| || ||||| || || || | ||||| Sbjct 3 CCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 62 Query 66531 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66590 | || ||||||||||| || |||||||| || || | |||||| ||| | | | | Sbjct 63 TTGTCGAAATCTACGGTCCTGAATCTTCCGGTAAAACTACTCTGACTCTGTCGGTGATTG 122 Query 66591 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66650 || | ||||| || || | || | ||| | | ||||||| |||||| ||||||| | Sbjct 123 CCCAGGCGCAAAAAATGGGCGCCACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGATC 182 Query 66651 CTGAGTACGCC 66661 |||| |||||| Sbjct 183 CTGAATACGCC 193 >seq1642876 Length=127 Score = 87.8 bits (96), Expect = 8e-13 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 66771 TCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGG 66830 |||| || ||||||||||| |||||||| ||| || || | |||||||| || || | Sbjct 107 TCGTGGTCGACTCCGTGGCAGCCCTGGTACCGAAAGCTGAAATTGAAGGCGAAATGGGCG 48 Query 66831 ACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCG 66876 ||| ||||| |||||||| || ||||| ||||| ||||| |||| Sbjct 47 ACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 233719221300474