Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq308140 138 3e-28 seq2939440 120 9e-23 seq2939619 111 5e-20 seq2908808 91.5 5e-14 seq2955694 84.2 7e-12 seq2832633 84.2 7e-12 >seq308140 Length=1303 Score = 138 bits (152), Expect = 3e-28 Identities = 211/298 (71%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 39457 GTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTC-ATC-- 39513 || || |||||| || |||| ||||| ||||||| | | ||||| ||| || Sbjct 307 GTTGCGGCCGTATTTTTCGGCCACGTATTCGATCACGCGGTC---GCGACCGTCCATGCA 251 Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||||| ||| | |||||||||||| || || || |||||||||||||| ||||| | Sbjct 250 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 191 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || ||| | ||||| |||||||||||| | | || || ||||||| || Sbjct 190 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACC 131 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | || ||||| || ||||| ||| ||| ||||| ||| ||||| ||| || Sbjct 130 GGCACCCGAACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAA 71 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39751 ||| |||| |||||||| ||||||||||||||| | || || || | |||| Sbjct 70 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13 Score = 87.8 bits (96), Expect = 6e-13 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 || |||||||| | |||||||| ||||| |||||||| ||||| || | ||| || Sbjct 1201 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCCCGACGCAGCATGTCCGCACC 1142 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 |||||||||||| ||||||| | ||| || || | |||||| || || || | ||| Sbjct 1141 ACCGAGGGTGTAACCGGCCATTACCTGGGCGATCTGCATCACCTGTTCTTGATACAGGAT 1082 Query 38668 GAGCCCGAAGGTCGGGTCCAG 38688 || ||| |||| || |||| Sbjct 1081 GATGCCGTAGGTAGGCGCCAG 1061 >seq2939440 Length=415 Score = 120 bits (132), Expect = 9e-23 Identities = 182/257 (71%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 39460 GCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAA--G 39517 || |||||| ||||||| |||||| ||||||| | | |||| || ||| || | Sbjct 256 GCGGCCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCGGC--CGTCCATGCAAAAG 199 Query 39518 TCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGC 39577 |||| ||| | ||||||||||||||| || || |||||||||||||||||||| | || Sbjct 198 TCGACGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGG 139 Query 39578 CCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCC 39637 | | | ||||| |||||||| ||| | |||| || ||||||| || || Sbjct 138 TCATATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCA 79 Query 39638 GCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCG 39697 | || || || ||||| || ||| || ||||| | ||| ||||| ||| ||||| Sbjct 78 CCTGACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCC 19 Query 39698 GCGACGACGAGGAAGTA 39714 |||| |||||||| Sbjct 18 ATCACGATCAGGAAGTA 2 >seq2939619 Length=415 Score = 111 bits (122), Expect = 5e-20 Identities = 181/258 (70%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 39460 GCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTC-ATC--GAA 39516 || |||||||||||||| ||||| |||||| | | ||||| ||| || ||| Sbjct 256 GCGGCCGTACTTCTCGGCCACGTATTCGATCACC---CGATCGCGACCGTCCATGCAGAA 200 Query 39517 GTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAG 39576 ||||| ||| | |||||||||||| || || || ||||||||||| || ||||| | || Sbjct 199 GTCGACGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAG 140 Query 39577 CCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGC 39636 | | | ||||| |||||||||||| | |||| || ||| |||||| || Sbjct 139 GTCATATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGC 80 Query 39637 CGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTC 39696 | || ||||| || || || ||| || ||||| | ||| ||||| ||| ||||| Sbjct 79 ACCTGACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTC 20 Query 39697 GGCGACGACGAGGAAGTA 39714 |||| |||||||| Sbjct 19 CATCACGATCAGGAAGTA 2 >seq2908808 Length=346 Score = 91.5 bits (100), Expect = 5e-14 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 38551 CTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACC 38610 |||||||| |||||||||| ||||| |||||||||||||| || | ||| || || Sbjct 241 CTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCGCGACGCAGCATGTCTGCGCCGCC 182 Query 38611 GAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 38670 ||||||||| || |||| | ||| || || | |||||| || || || | ||||| Sbjct 181 GAGGGTGTAACCCGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGATGAT 122 Query 38671 CCCGAAGGTCGGGTCCAG 38688 ||| ||||||| |||| Sbjct 121 GCCGTAGGTCGGTGCCAG 104 >seq2955694 Length=463 Score = 84.2 bits (92), Expect = 7e-12 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 || |||||||| | ||||| ||||| || |||||||||||||| | | ||| || Sbjct 235 CTGCTTGGCCATTTCTTCGGGTTTCTTTTTACCCATGGCGCGACGCAACATGTCCGCGCC 176 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 ||||||||||| || |||| || ||| || || | |||||| ||||| || | ||| Sbjct 175 GCCGAGGGTGTAGCCCGCCATGACCTGGGCAATCTGCATCACCTGTTCCTGATACAGGAT 116 Query 38668 GAGCCCGAAGGTCGGGTCCAG 38688 || ||| |||| || |||| Sbjct 115 GATGCCGTAGGTTGGCGCCAG 95 >seq2832633 Length=255 Score = 84.2 bits (92), Expect = 7e-12 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 || |||||||| | |||||||| ||||| |||||||||||||| | | ||| || Sbjct 21 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCGCGACGCAACATGTCCGCGCC 80 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 ||||||||||| ||||||| | ||| || || | |||||| || || || | ||| Sbjct 81 GCCGAGGGTGTAACCGGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGAT 140 Query 38668 GAGCCCGAAGGTCGGGTCCAG 38688 || ||| |||| || |||| Sbjct 141 GATGCCGTAGGTTGGCGCCAG 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154363026843650