Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_028976.1
Length=50113
Score E
Sequences producing significant alignments: (Bits) Value
seq308140 138 3e-28
seq2939440 120 9e-23
seq2939619 111 5e-20
seq2908808 91.5 5e-14
seq2955694 84.2 7e-12
seq2832633 84.2 7e-12
>seq308140
Length=1303
Score = 138 bits (152), Expect = 3e-28
Identities = 211/298 (71%), Gaps = 6/298 (2%)
Strand=Plus/Minus
Query 39457 GTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTC-ATC-- 39513
|| || |||||| || |||| ||||| ||||||| | | ||||| ||| ||
Sbjct 307 GTTGCGGCCGTATTTTTCGGCCACGTATTCGATCACGCGGTC---GCGACCGTCCATGCA 251
Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573
|||||||| ||| | |||||||||||| || || || |||||||||||||| ||||| |
Sbjct 250 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 191
Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633
|| ||| | ||||| |||||||||||| | | || || ||||||| ||
Sbjct 190 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACC 131
Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693
|| | || ||||| || ||||| ||| ||| ||||| ||| ||||| ||| ||
Sbjct 130 GGCACCCGAACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAA 71
Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39751
||| |||| |||||||| ||||||||||||||| | || || || | ||||
Sbjct 70 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13
Score = 87.8 bits (96), Expect = 6e-13
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607
|| |||||||| | |||||||| ||||| |||||||| ||||| || | ||| ||
Sbjct 1201 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCCCGACGCAGCATGTCCGCACC 1142
Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667
|||||||||||| ||||||| | ||| || || | |||||| || || || | |||
Sbjct 1141 ACCGAGGGTGTAACCGGCCATTACCTGGGCGATCTGCATCACCTGTTCTTGATACAGGAT 1082
Query 38668 GAGCCCGAAGGTCGGGTCCAG 38688
|| ||| |||| || ||||
Sbjct 1081 GATGCCGTAGGTAGGCGCCAG 1061
>seq2939440
Length=415
Score = 120 bits (132), Expect = 9e-23
Identities = 182/257 (71%), Gaps = 4/257 (2%)
Strand=Plus/Minus
Query 39460 GCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAA--G 39517
|| |||||| ||||||| |||||| ||||||| | | |||| || ||| || |
Sbjct 256 GCGGCCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCGGC--CGTCCATGCAAAAG 199
Query 39518 TCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGC 39577
|||| ||| | ||||||||||||||| || || |||||||||||||||||||| | ||
Sbjct 198 TCGACGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGG 139
Query 39578 CCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCC 39637
| | | ||||| |||||||| ||| | |||| || ||||||| || ||
Sbjct 138 TCATATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCA 79
Query 39638 GCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCG 39697
| || || || ||||| || ||| || ||||| | ||| ||||| ||| |||||
Sbjct 78 CCTGACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCC 19
Query 39698 GCGACGACGAGGAAGTA 39714
|||| ||||||||
Sbjct 18 ATCACGATCAGGAAGTA 2
>seq2939619
Length=415
Score = 111 bits (122), Expect = 5e-20
Identities = 181/258 (70%), Gaps = 6/258 (2%)
Strand=Plus/Minus
Query 39460 GCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTC-ATC--GAA 39516
|| |||||||||||||| ||||| |||||| | | ||||| ||| || |||
Sbjct 256 GCGGCCGTACTTCTCGGCCACGTATTCGATCACC---CGATCGCGACCGTCCATGCAGAA 200
Query 39517 GTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAG 39576
||||| ||| | |||||||||||| || || || ||||||||||| || ||||| | ||
Sbjct 199 GTCGACGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAG 140
Query 39577 CCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGC 39636
| | | ||||| |||||||||||| | |||| || ||| |||||| ||
Sbjct 139 GTCATATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGC 80
Query 39637 CGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTC 39696
| || ||||| || || || ||| || ||||| | ||| ||||| ||| |||||
Sbjct 79 ACCTGACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTC 20
Query 39697 GGCGACGACGAGGAAGTA 39714
|||| ||||||||
Sbjct 19 CATCACGATCAGGAAGTA 2
>seq2908808
Length=346
Score = 91.5 bits (100), Expect = 5e-14
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 38551 CTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACC 38610
|||||||| |||||||||| ||||| |||||||||||||| || | ||| || ||
Sbjct 241 CTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCGCGACGCAGCATGTCTGCGCCGCC 182
Query 38611 GAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 38670
||||||||| || |||| | ||| || || | |||||| || || || | |||||
Sbjct 181 GAGGGTGTAACCCGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGATGAT 122
Query 38671 CCCGAAGGTCGGGTCCAG 38688
||| ||||||| ||||
Sbjct 121 GCCGTAGGTCGGTGCCAG 104
>seq2955694
Length=463
Score = 84.2 bits (92), Expect = 7e-12
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607
|| |||||||| | ||||| ||||| || |||||||||||||| | | ||| ||
Sbjct 235 CTGCTTGGCCATTTCTTCGGGTTTCTTTTTACCCATGGCGCGACGCAACATGTCCGCGCC 176
Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667
||||||||||| || |||| || ||| || || | |||||| ||||| || | |||
Sbjct 175 GCCGAGGGTGTAGCCCGCCATGACCTGGGCAATCTGCATCACCTGTTCCTGATACAGGAT 116
Query 38668 GAGCCCGAAGGTCGGGTCCAG 38688
|| ||| |||| || ||||
Sbjct 115 GATGCCGTAGGTTGGCGCCAG 95
>seq2832633
Length=255
Score = 84.2 bits (92), Expect = 7e-12
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607
|| |||||||| | |||||||| ||||| |||||||||||||| | | ||| ||
Sbjct 21 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCGCGACGCAACATGTCCGCGCC 80
Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667
||||||||||| ||||||| | ||| || || | |||||| || || || | |||
Sbjct 81 GCCGAGGGTGTAACCGGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGAT 140
Query 38668 GAGCCCGAAGGTCGGGTCCAG 38688
|| ||| |||| || ||||
Sbjct 141 GATGCCGTAGGTTGGCGCCAG 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 154363026843650
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