Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_028999.1 Length=309208 Score E Sequences producing significant alignments: (Bits) Value seq501696 98.7 2e-15 seq240294 96.9 7e-15 >seq501696 Length=102 Score = 98.7 bits (108), Expect = 2e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 294859 TATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTA 294918 |||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1 TATGGTGCCGGCACCAGGAGTCGAACCCGG-GACCTACTGATTACAAGTCAGTTGCTCTA 59 Query 294919 CCAGCTGAGCTATAACGGC 294937 ||| |||||||||| |||| Sbjct 60 CCAACTGAGCTATACCGGC 78 >seq240294 Length=15375 Score = 96.9 bits (106), Expect = 7e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 294858 ATATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCT 294917 ||||||||||| || ||| ||||||||| |||||||||||||||||||||||||||| Sbjct 3765 ATATGGTGCCGGCACCAGGAGTCGAACCCGG-GACCTACTGATTACAAGTCAGTTGCTCT 3707 Query 294918 ACCAGCTGAGCTATAACGGC 294937 |||| |||||||| | |||| Sbjct 3706 ACCAACTGAGCTAAACCGGC 3687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 950184907106183