Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq3088503 347 2e-91 seq3088488 331 2e-86 seq3063309 163 5e-36 seq2959876 113 8e-21 seq3084702 93.3 8e-15 >seq3088503 Length=21467 Score = 347 bits (384), Expect = 2e-91 Identities = 1029/1556 (66%), Gaps = 43/1556 (3%) Strand=Plus/Minus Query 1291 AAGCGGTTCGTTTAACAGGGCGTGCATGGTGGCCCATGCGATATCAGCGTGGCTGGCTTC 1350 ||||||||||||| || ||||| | ||||| || | || || |||| || | Sbjct 11492 AAGCGGTTCGTTTTGCAATGCGTGAAATAGCGCCCAGGCCAGGTCGGCATGGCCGGTGTT 11433 Query 1351 CTCGGTGCGACTGGCCTCATAGGTGGCGCTGCGCCCGC-TGCTGGTCATGGTTTTGCGGA 1409 ||| |||| | || |||||| ||| |||| ||| ||| | || ||||||| Sbjct 11432 GTCGTTGCGCCCTGCGGTGTAGGTGTACTGGCGACCGCCTGC-GGTGACCGTCTTGCGGA 11374 Query 1410 TGGACATAAACGACTGTGTGACATCAGTTGCTCCGGCGTCGTACTCCAGACAGCCACGGC 1469 | | ||| | |||||| | | || || ||||||||| ||||||| | ||| Sbjct 11373 TCGCCATCATCGACTGCGCCATGTCGGTCCACCCGGCGTCGAACTCCAGCCGGCCGTTAT 11314 Query 1470 GAATCGTGTCTTTCGCCTTGAGCACCATTGCG-GTTTTCATTTCTGGCGTGTAACGGATA 1528 | ||| ||| | ||||| ||||||| ||| ||||| | ||| |||| || | || Sbjct 11313 GGATCACGTCATAGGCCTTCAGCACCAG-GCGTGTTTTGACTTCGGGCGAATAGCTGAAG 11255 Query 1529 CCGCGTGCCGCCGGGTAGAATGAGCGCACCAACTGGAATACACCGAGACCGAGGCCTGTT 1588 | | |||||| |||| |||||||| ||| || ||| ||| || || || Sbjct 11254 GTGGTCACAGCCGGGAAGAACTGGCGCACCAGCTGCGCCACGCCGCTACCCAGCCCGGTG 11195 Query 1589 GCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGGCTTCTGCC 1648 | ||||| ||||| || || ||| || || | ||| | | ||| Sbjct 11194 ACATCAATCCCGATATAGGTCACCCAGTAGCGGTCGCAGACGTTTTTGATAAATGCCGCC 11135 Query 1649 TGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCC 1708 || || |||||||||||||| | ||||| |||||||| | ||| || ||||| ||| Sbjct 11134 TGGGCCGCAAAGTCCATGCCCCGGAATTGGTGCCGCTCCAGGACGCGGAATTTGCCGCCC 11075 Query 1709 GAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGACGGGTCG 1768 | |||| ||||||||| | || || |||| | || ||||| | | |||||| Sbjct 11074 GGTACCAGCGGCGGCGCAACCACCACCAGCCCGGAGCAATCACCGGTTTCCGCTGGGTCG 11015 Query 1769 TAGCCAATCCAGACCGGGCGCGAGCCGAATGGATGGTCGGCGAACGGGGCGAAGTCCTC- 1827 ||||| ||||| ||| | || ||||| || | |||||| || | ||||||| Sbjct 11014 TAGCCGATCCATACCTGACGGTCACCGAACGGCCGCATGGCGAATGGCTTGTAGTCCTCT 10955 Query 1828 --CCATGTTTCCATC--AC-GTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATACC 1882 |||| || | | || |||||||||||||| ||||||| | | ||||| || | Sbjct 10954 GCCCAT---TCAACCCAACTGTCGACCATGCAGCTCTGCAGCAACGCCAACGGAAAGAT- 10899 Query 1883 GATGCCTT-ATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACTGTT 1941 | || || |||||| |||||||| ||||| |||||||| || ||||| |||| Sbjct 10898 GCTGGCTCCATCGTCAACAAACTCACACATCAACAGGTTGGCGAACGCCTCAGGGCTGTA 10839 Query 1942 TTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAAT 2001 || || | | || || | ||||||||| ||||| ||| |||||| || Sbjct 10838 CTCCCGACGCAACTCCTCAATGTCGAACAGATCACAGCCGCCGTGCTCTGCGTCCAGGAT 10779 Query 2002 AGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGC--GAGCGCGCTG 2059 ||||| |||||||||||| | ||| |||| ||| | | || | |||||| | | Sbjct 10778 GGTGACGATCTGCCGCCACAACCGGTCCTCGCA--GAACCGCCCCTGTTGGAGCGCCCCG 10721 Query 2060 TGACTGATGTCGATTTCGATGCGGTCAGCGGCACTGGCGCGCCCCTTGTTGAACAGCTCG 2119 || | ||||| | | || | | ||| | ||||| ||| |||||||| ||||| Sbjct 10720 TGGGAAACGTCGACCTTGGTGTGTT--GCGCCGCTGGCTTACCC-TTGTTGAAGCGCTCG 10664 Query 2120 CCAGACCAGAAGGGGTAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAG 2179 || | |||||||| ||| || | || |||| |||| || ||||| ||||| ||| | Sbjct 10663 CCGGTCCAGAAGGTGTAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAGTAGGTTTTG 10604 Query 2180 CGCAGATGCTTTTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAAATTCGGG 2239 ||| | ||| ||| |||||||||||| ||||| ||| ||| | || ||| || Sbjct 10603 CGCCACTTCTTGTGCATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCAAACTTGAAC 10544 Query 2240 ATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAATTG 2299 ||||||| | ||| |||| || | | ||||| | || ||| ||||| | |||| Sbjct 10543 GTCCAGAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTACGCGCATTG 10484 Query 2300 GTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCGGTCAGG 2359 || ||||| |||| ||||| ||||||||| | | || || || || || || ||||| Sbjct 10483 GTACCGAGGAAAAACAGCTCGGCGCCGTTG--GGCAAT-ACGATGGGATCCCCCGTCAGC 10427 Query 2360 TCGA---CGTCAACCAGTCGCGCAAACTGGAT-GATGTATTCCCGGAACACGTAAGCCTG 2415 |||| || |||| || ||||| || | |||||| | || |||| || || || Sbjct 10426 TCGACACCGATAACCTCACGGGCAAA-TGCCTGGATGTACCCGCGAAACAGATAGGCTTG 10368 Query 2416 CGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGC 2475 |||| || ||||| || ||||| || | ||||| | ||||| || | || Sbjct 10367 GTTTTTCGATGCGGACAGGAAGATCTGATTGCGCCCGGTTTCCAGCGCATCAAGAAACGC 10308 Query 2476 CTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACG 2535 |||||||| |||||| | |||||||| ||||| ||| |||||| || ||||| | || Sbjct 10307 CTCGCGGGCAAAGTAATAGGTCGCGCCGATCTGCCGGCTTTTGAGGATGACGCGAGTCCG 10248 Query 2536 GTGCGCCAGT-CCTGCCCGGTACCACTGCAACTGGTATTCGAAAGACTGGTCGAAGAAAA 2594 || | | || ||||||||||| | |||||| |||||| | ||||| || Sbjct 10247 TTG----ATTGCCAGCCCGGTACCAGTCTTTCTGGTAGTCGAAACAGCCGTCGATAAACG 10192 Query 2595 TTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTTCTTTTTCGGCCTCTTAC-GC 2653 ||| || | ||| ||| ||||||| | ||| |||| || || || | | Sbjct 10191 CTTCACGCAACAGCTCGATCTGCTCTTCGCTGATATCGTT-TTTTGGGGTCTTTTTCTTC 10133 Query 2654 TCCCCCTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTG 2713 |||| ||| || || || | ||| ||||| || |||| ||| | || | | ||| Sbjct 10132 GGACCCTCGTTGCGTTTAGCCAGGTTAGGGTTGAGCTCGGTTTCGGTACC-GCCGCCCTG 10074 Query 2714 -TAGCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAA 2772 |||| | | | ||| | || || | || || ||||| ||||| || ||||| Sbjct 10073 AAAGCGCTGAATTCTGGCCTGGCGTTCCAATTGGCGGTGCAGCAGATCAATTTCCTTGAA 10014 Query 2773 GTCGCCGCCTGACTTTTGC--GGCTTGGCGATGAGCTGAATCAGGCGCGCCTCAAG 2826 ||| ||||| || |||| |||| ||| ||||| | || ||||| || || Sbjct 10013 GTCCCCGCC--GCTCTTGCTTTCCTTGAGGATCAGCTGCACCAACCGCGCTTCCAG 9960 Score = 116 bits (128), Expect = 7e-22 Identities = 202/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 4784 TATCAGGATGACCCGAAACTCGTTGCCATCGTTGGCCGTAAGCTGCTGGCCGACAAATAT 4843 || ||||| ||||| | || || | ||| || || | |||||||||||||| ||| Sbjct 8099 TACCAGGAAGACCCTGATCTGGTGGTGATCTGCGGTCGCCAACTGCTGGCCGACAAGTAT 8040 Query 4844 TTCCCGCTGGTGAACAAGCCGCAGGAAAACAGCGAGGCGCTCGCGGCAGATATCATCATC 4903 |||||| | | ||||| | | | || ||| || || |||||| ||| | Sbjct 8039 TTCCCGATCATCAACAAAGACAACGCGCCGACTGAAATGCTGGCCGCCGATATCGTCACC 7980 Query 4904 AGCCAGAAGCGAATCGGCAACCTGCCTGCTGTGCGTGTGCCGTACTTCCCGGCGAATGCC 4963 || || ||||| | ||||| |||| || ||||| ||||| ||||||||| || | Sbjct 7979 AGTCAAAAGCGCTTGGGCAATTTGCCAGCCGTGCGCGTGCCTTACTTCCCGCCGCGCGGG 7920 Query 4964 GTGTTAGTGACCACGCTGGAAAACCTCTCTATCTATTTCATGGATGAGAGCCACCGCCGC 5023 || | || |||| |||||||||||| || ||||| | ||| | |||| ||||||| Sbjct 7919 TTGCTGGTCACCAAGCTGGAAAACCTGTCGATCTACTGGCAGGAAGGCAGCCGCCGCCGC 7860 Query 5024 AGCATTGATGAAAACCCGAAAAAAGACCGCGTGGAAAACTACGAGTCGATGAAT 5077 | | | | || || | || |||||| | ||||||||||||||| | ||| Sbjct 7859 ACCGTCGTCGACAATGCCAAGCGTGACCGCATCGAAAACTACGAGTCGGTCAAT 7806 Score = 87.8 bits (96), Expect = 3e-13 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 474 ATGCCGTCCGGTTTTCCGCCGGGAGCGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCCT 533 || |||||| || ||| ||| | || | ||||| ||| ||| ||||| |||| Sbjct 12282 ATCCCGTCCTTCTTGCCGGTGGGCGAATACACAAACAAGTTGCGAAAATTGCCTGGCCCC 12223 Query 534 TTCGAGTTACGCATCGCCTCGCGCAGCGATTCGACGTCGGTCGCGCTCTGCGCCGGGTCA 593 || |||| | |||| ||||| | |||| ||||| | |||| || | || Sbjct 12222 TTGGAGTCCTTGAGAGCCTTGCGCAAAGCGTCGATATCGGTTTCAGTCTGTGCGGCATCG 12163 Query 594 GTCACATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGC 653 |||| || | ||| | || ||||| ||| |||| ||| |||||||||||||||| | Sbjct 12162 GTCATGTAGAGAATGAAGCCGGCGTGACTGCCATTCTCGTAGTACTTGCGGCGGAACAAC 12103 Query 654 GTCGCGGATTCATTCAGCCATGCGGAATTAAGCGCGCTGAGATATTCAGGCAGGCCGTAA 713 || || ||||| || ||| | || || | | || || | | || |||| ||| ||| Sbjct 12102 GTGGCCGATTCGTTGAGCAACGCCGACTGCAAGGCACTAATCCACTCCGGCAAGCCATAA 12043 Query 714 ATCTCCTG 721 |||||||| Sbjct 12042 ATCTCCTG 12035 >seq3088488 Length=17142 Score = 331 bits (366), Expect = 2e-86 Identities = 1141/1758 (65%), Gaps = 100/1758 (6%) Strand=Plus/Minus Query 13898 GATTTTCACCACGGCACGCAGGTCATCGAAATTAATGACGGTACGCGTGTTATTTCCACA 13957 |||| || ||||||| || |||||||||| | || ||||| || || ||| ||| Sbjct 16622 GATTATCTCCACGGCGTGCGGGTCATCGAACTCAACGACGGCACCCGCCCCATTCGCACT 16563 Query 13958 GTAGCGACTGCGGTCGTCGGCATGGTTTGTACAGCCAGCGATGCAGATGTCACGCTATTT 14017 | | || || ||| ||||||||||||| || || ||||| || ||| | ||| Sbjct 16562 ATTCCCACCGCAGTCATCGGCATGGTTTGCACCGCTGAAGATGCGGACC-CACTCGTTTT 16504 Query 14018 CCC-CTCAATGAACCGGTACTGATTACCAATGTGCAAAGTGCCATTGCGAAAGCCGGTAA 14076 ||| || | || || || || ||||| ||||||| ||| | | || ||||| Sbjct 16503 CCCTCTGGACACTCCAGTCCTCATCACCAACGTGCAAACCGCCGTCGGCAAGGCCGGCGT 16444 Query 14077 AAAAGGCACGCTGGCTGCATCACTGCAGGCCATTGCAGACCAGTCAAAACCCGTCACTGT 14136 || ||||| |||||||| ||||| | ||| || |||||| | || || | | | Sbjct 16443 CAAGGGCACCCTGGCTGCCAGCCTGCAAGGCATCGCCGACCAGACCAAGCCTTACGTTAT 16384 Query 14137 TGTTGTACGTGTTGAGGATGGAACCGGCGATGACGAGGAAGCTGCGCTCGCACAGACTGT 14196 || ||||| || | || || | | ||| | ||| || || || ||| | || || Sbjct 16383 CGTGGTACGGGTCAAAGAAGGCGCTGACGAAG-CGACGA--CTACGAGCGCCCTGATTG- 16328 Query 14197 TTCCAACATTATCGGAGGTACGGATGAGAACGGTAAATACACCGGAATCAAGGCTCTCCT 14256 | ||||| | |||| |||||||||| || || ||||| || Sbjct 16327 --------------GCGGTACAACACCAACCGGTCAATACACCGGCATGAAAGCTCTGCT 16282 Query 14257 GACCGC----TCAGGCCGTCACCGGCGTCAAGCCGCGTATTCTTGGGGTGCCGGGGCTGG 14312 | || ||| || || ||| | | |||||||| ||||| ||||| || || | Sbjct 16281 CGCAGCCAAATCACGC-GTG---GGCATGACTCCGCGTATCCTTGGCGTGCCAGGCCTCG 16226 Query 14313 ATACTAAAGAGGTCGCGGTCGCGCTTG-CGTCGGCTGCCATTAAGTTACGTGCATTTGCT 14371 | | | || || ||| || | || | | |||| | | || || ||||| Sbjct 16225 ACAGTTTGCCAGTAGCCACCGCCCTCGGCGCCATC-GCCAAAGACCTGCGCGCCTTTGCA 16167 Query 14372 TACGTCAGCGCGTGGGGATGTAAGACTATTTCCGAAGCGATGGAATATCGTAAAAATTTC 14431 ||||| ||||| ||| || || || | || | ||| || || | || ||| Sbjct 16166 TACGTAAGCGCCTGGAACTGCAAAACCAAGGAAGAGGTAGTGGCGTACCGCGAGAACTTC 16107 Query 14432 AGCCAGCGCGAGCTGATGGTTATCTGGCCTGATTTCCTCGCATGGGACACAGTGAAAAAT 14491 | ||||| ||||||| || ||||| || ||||| |||||||| || | || Sbjct 16106 GGTGCCCGCGAAATGATGGTGATTTGGCCGGACTTCCTGAACTGGGACACTGTCACCAAC 16047 Query 14492 ACCACCGCAACGGCTTACGCCACTGCGCGTGCACTCGGCCTGCGTGCTTACATCGACCAG 14551 | ||||| | |||| ||| || || || |||||||| || || | |||||||| Sbjct 16046 AAGACCGCCAGCGCTTCGGCCGTGGCCCGCGCCCTCGGCCTTCGCGCCAAGATCGACCA- 15988 Query 14552 ACTGTCGGCT-GGCACAAAACCCTGTCTAACGTTGGTGTACAGGGAGTTACCGGCATCAG 14610 | | ||| | |||| ||||||||||| ||||| | || || || ||||| ||||| Sbjct 15987 AGAGACGGGTTGGCATAAAACCCTGTCCAACGTGGCCGTGAGTGGCGTGACCGGTATCAG 15928 Query 14611 CGCCTCAGTGTTCTGGGATTTGCAGGCATCCGGCACCGATGCTGACCTTCTCAACGAGGC 14670 |||| |||||||||||| |||| | | |||||| || || |||||| Sbjct 15927 CGCCGACGTGTTCTGGGATCTGCAAAACCCAGCCACCGACGCCAACTACCTCAACAGCAA 15868 Query 14671 CGGGGTTACAACTCTGGT--ACGCAAGGACGGTTTCCGCTTCTGGGGTAACCGCACCTGC 14728 || || || || ||| | |||| | ||||||| ||||||||||||| |||||||||| Sbjct 15867 CGACGTCACCACCCTGATCAACGCCA--ACGGTTTTCGCTTCTGGGGTAGCCGCACCTGC 15810 Query 14729 TCAGATGACCCGCTTTTTCTGTTTGAGAACTACACCCGTACCGCGCAGGTACTGGCCGAC 14788 ||||||||| | || || || ||||||||||| ||||||||| | || || ||| Sbjct 15809 AGTGATGACCCGTTGTTCGCCTTCGAAAACTACACCCGCACCGCGCAGATCCTCGCGGAC 15750 Query 14789 ACGATGGCTGAAGCGCACATGTGGGCGGTCGATAAGCCCATTACCGCCACGCTCATTCGT 14848 || |||| ||||||||||||||||| || || || || |||| | || | || Sbjct 15749 ACCATGGGCGAAGCGCACATGTGGGCAGTTGACCGCCCTATGCACGCCTCCCTGGTACGC 15690 Query 14849 GACATTGTTGACGGCATCAATGCCAAATTCCGCGAGCTGAAAACAAACGGCTACATCGTG 14908 ||| | || || ||| | | ||||| | |||||| ||||| | | |||||| | | Sbjct 15689 GACCTGGTCGAAGGCGTAAGCGCCAAGATGCGCGAGTTGAAATCCCAGGGCTACCTGATC 15630 Query 14909 GACGGTGAATGCTGGTTCGACGAGGA-ATCGAACGACAAGGAGACCCTGAAAGCCGGGAA 14967 | ||| |||||| | || || ||| ||| ||| || ||||| || ||||| || Sbjct 15629 GGCGGCAGTTGCTGGAACCCGGACGACATC-AACACCAAAGACACCCTCAAGGCCGGCAA 15571 Query 14968 ACTGTATATCGACTACGACTATACGCCGGTTCCGCCACTGGAGAGCATGACCATGCGCCA 15027 || | | || |||||||| || || || |||||||| || | | ||| | ||||| Sbjct 15570 GCTCTGGCTTGATTACGACTACACCCCCGTGCCGCCACTTGAAGACCTCACCTTCCGCCA 15511 Query 15028 GCGTATCACCGATAAATATCTGGTGAATCTGGCCGAATCGGTCAACAGCTAA-------- 15079 ||| |||||||| || ||| | | | ||| | ||| ||||||| Sbjct 15510 GCGAATCACCGACCGTTACCTGATCGACTTCGCCAAGGGCATCAGCAGCTAAACCGGGTC 15451 Query 15080 -----------GGAG-----CCTGA---------------AACA---ACATGGCACTACC 15105 |||| ||||| |||| ||||||| | || Sbjct 15450 TCCCCGCGAGGGGAGTTCACCCTGAACACGTATCCCGGAGAACACCGCCATGGCAATGCC 15391 Query 15106 CCGTAAACTCAAATACCTGAATATGTTCAACGATGGCCTCAGCTACATGGGTGTTGTTGA 15165 || || |||||| |||| || ||||||| || ||| |||||| | || ||| ||| Sbjct 15390 TCGCAAGCTCAAAAACCTCAACCTGTTCAATGACGGCAACAGCTATCTCGG-CTTGGTGA 15332 Query 15166 A-TCCGTAACGTTGCCGAAGCTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGGTATGA 15224 | ||| | || |||| || ||||||| | ||| |||||||||||||| |||| Sbjct 15331 AGTCCCTCACCCTGCCCTCCCTCGGCCGCAAGATGGAAGCGTATCGCGGCGGCGGCATGA 15272 Query 15225 ATGGCGCGG-CAGCGATTGACCTCGGCCT---CGACGACGATGCATTAACCGTCGAATGG 15280 ||||| ||| || | |||||| ||| | |||||||| |||| | |||||||| Sbjct 15271 ATGGCCCGGTCAAAG-CTGACCTGGGCATGTCCGACGACG--GCATCCA-GTTCGAATGG 15216 Query 15281 TCTGTCGGCGGCCTGCCTGATGTG-GCTCTGTGGGCGCAGTACGCCGCCCCGGGCGCTGA 15339 ||| ||||| ||| || |||| || | |||| || ||| ||| Sbjct 15215 AAGACCGGTGGCCT---CGATCTGATCTCTCTGCG-TCAGTTCGGCGCGGTCAACGCCTC 15160 Query 15340 TGCTGTGCCGCTGCGTTTTGCTGGTTCTTACCAGCGCGACGACACCGGCGAAATC-GTGG 15398 |||| | ||||| || |||| ||||||||| |||||||| |||||| || | Sbjct 15159 CAGTGTGGCCCTGCGATTCTCTGGCCCTTACCAGCAAGACGACACAGGCGAAGTCAGCAA 15100 Query 15399 CGTCGAGGTGGTCATGCGTGGCCGTCATAAAGAAATCGACGGCGGCGAGAATAAGCAGGG 15458 || || ||||| ||||||||||||| || ||||| ||||| ||| || Sbjct 15099 TGTGGAAGTGGTTGTGCGTGGCCGTCACGAAACCATCGAGATGGGCGATGCCCAGCCCGG 15040 Query 15459 TGAAAACACCTCGACCAAAC--TGTCGACTGTCTGCACCTACTACCGCCTCACGATTGAT 15516 || |||| || || | || | || ||||| ||||||| || || | ||| Sbjct 15039 CGAGGACAC--TGAACACTCCATGACCACCACCTGCAGCTACTACAAGCTGACCGTAGAT 14982 Query 15517 GGCAGCGACGTCATCGAAATCGACACCGTCAACATGGTCGAGAAGGTGAACGGCGTCGAC 15576 ||| || ||||||| ||||| ||||| | ||||||||||| ||||| || ||| Sbjct 14981 GGCGAAGAAATCATCGAGATCGATCTGCTCAACTTTGTCGAGAAGGTCAACGGTGTGGAC 14922 Query 15577 CGTCTGGAGCAGCACCGC 15594 |||||| |||||||| Sbjct 14921 ATGCTGGAGAAGCACCGC 14904 >seq3063309 Length=1409 Score = 163 bits (180), Expect = 5e-36 Identities = 813/1268 (64%), Gaps = 69/1268 (5%) Strand=Plus/Minus Query 1292 AGCGGTTCGTTTAACAGGGCGTGCATGGTGGCCCATGCGATATCAGCGTGGCTGGCTTCC 1351 || ||||| || ||||||||||||||| | | ||| ||||| || ||||||| || | Sbjct 1231 AGGGGTTCATTGAACAGGGCGTGCATGATCGACCAGGCGATGTCGGCGTGGCCGGTGGCG 1172 Query 1352 TCGGTGCGACTGGCCTCATAGGTGGCGCTGCGCCCGCTGCTGGTCATGGTTTTGCG---G 1408 || ||||| || |||||| | ||| |||||| |||| ||| ||| | Sbjct 1171 TCAGTGCGCGAAGCGCTGTAGGTGAC-CTGG--CCGCTGGTGGT---GGTGCCGCGCTTG 1118 Query 1409 ATGGACATAAACGACTGTGTGACATCAGTTGCTCCGGCGTCGTACTCCAGACAGCCACGG 1468 |||| || |||| ||||| || || || |||||||| | || | | || | Sbjct 1117 ATGGTCAGGAACGCCTGTGCGATGTCGGTCCAACCGGCGTCCCATTCGATGCGGCTCCCC 1058 Query 1469 CGAATCGTGTCTTTCGCCTTGAGCACCATTGCGGTTTTCATTTCTGGCGTGTAACGGATA 1528 | |||||||| | || ||||| |||| || | |||| | || | ||||| |||| Sbjct 1057 TGGATCGTGTCCTGGGCTTTGAGTACCAGTGTGTTTTTGGTCTCGAGGCTGTAATGGAT- 999 Query 1529 CCGCGTGCCGC---CGGGTAGAATGAGCGCACCAACTGGAATACACCGAGACCGAGGCCT 1585 ||| || ||| ||||||||| |||||||| | || |||||| |||| || Sbjct 998 -CGC-TGTCGCACGCGGGTAGAAGTCGCGCACCAGGTCAAACACACCGTAGCCGATACCG 941 Query 1586 GTTGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGA--TGGCTT 1643 |||| || |||||||||| | |||||| | ||| || || | || ||| | Sbjct 940 GTTGTATCGATGCCGATGTGCTGCACGTTGAAACGCTCGGTAAGTTTCTTGACCTGG--T 883 Query 1644 CTGCCTGCG-CGGCAAAGTCCATGCCTTT-CCACTGGTGACGCTCCAGCATGCGAAACTT 1701 | ||||| | || | | |||| ||| ||| ||||| ||||| || || Sbjct 882 CGGCCTGGTACTTGAACGAC--TGCCCACGCCAACTGTGTTTTTCCAGGATGCGGAATTT 825 Query 1702 GCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGA 1761 | || | ||| ||||| |||| || || || ||| ||||| |||| || Sbjct 824 CGCTCCGGGTTCCAGTGGCGGAGCGACCACCACGCACGTGGCGTCGTCGCGGGTGCGGCT 765 Query 1762 CGGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGAATGGATGGTCGGCGAACGGGGCGAA 1821 ||| |||||||||| ||| ||||||| |||||| || | || ||| | | Sbjct 764 CGGATCGTAGCCAAGCCACACCGGGCTGTTGCCGAAAGGTCGATCCAGTTCAGGGTTGTA 705 Query 1822 GTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATAC 1881 ||||||||| | || |||| || |||| ||| || | || ||| | Sbjct 704 GTCCTCCCACAA---CGACAGGTCGGAGTAACACCGCTCCAGGTCTTTGAGGCCGAAGGC 648 Query 1882 -CGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACTGT 1940 | || || | ||||| |||| ||| ||||| | || || | || || || Sbjct 647 GCTCTGGCTGCT-GTCGATGAACTTGCAGTAGAACAGCTGCTGGAATTTGTCTTCGTCGT 589 Query 1941 TTTCGCGTCTG-AGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCA 1999 || | ||| || || |||||||||||||| |||||| ||||| | |||||| || Sbjct 588 ACTCCAG-CTGCAGTTGCTCGAGGTCGAACAGATCGCAGCCGCCGGCTATGGCGTCGTCC 530 Query 2000 ATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTG 2059 | |||| | | ||||| || ||||| | ||| | | || | | || | Sbjct 529 AGGGTGATGGTTTTGCGCCATTGGCCGTCGGGGCACA-ATGCGCCCTGG----------G 481 Query 2060 TGACTGATGTCGATTTCGATGCGGTCAG-------CGGCACT---GGCGCGCCCCTTGTT 2109 || ||| | | ||| || || ||| |||| | | ||||| |||| Sbjct 480 TGTATGACGCC----TCGGTG-GGCCAGGTGCCGCCGGCCTTCTTGCCGCGCTTGCTGTT 426 Query 2110 G---AACAGCTCGCCAGACCAGAAGGGGTAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGA 2166 | || |||||| |||||||| ||||| || ||||| | | | || ||||| Sbjct 425 GCGGAATTCCTCGCCCGACCAGAACGGGTACGCTTGGTGCGAGACTGCGCTGGGCGTCGA 366 Query 2167 AAAGTAAGTTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTT 2226 |||||| ||| |||| | ||| || | | ||||| | || || ||| || || Sbjct 365 AAAGTAGGTTTTGCGCCACTTCTTGTGGGTGCCCATGGCACTGGCCACGGTGCTGAGTTT 306 Query 2227 CTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGTGC 2286 | || | | ||||| || |||||||| || | || ||| | | || ||| || Sbjct 305 GTCGAAGTCACGTATCCAAAAATACTCATCGACGTAGACGTGGCCATGGTAGCCCTGGGC 246 Query 2287 GGTGTTGGAATTGGT-GCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCG 2345 |||| || |||||| | | ||||| ||||| ||||||||| || ||| ||| Sbjct 245 GGTGCTGCTATTGGTCGACAAGAAACG-CAGCTCGGCGCCGTTGCTGAGCGTGA---TCG 190 Query 2346 GGTCGCCGGTCAGGTCGACGTC-AACCAGTCGC---GCAAACTGGATGATGTATTCCCGG 2401 ||| ||||||||| |||| ||| ||||| | || ||||||||||||||||| ||| Sbjct 189 GGTTGCCGGTCAGCTCGATGTCGAACCACT-GCTTTGCAAACTGGATGATGTAACTGCGG 131 Query 2402 AACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGC 2461 || | | | ||||| ||||||||||| || | |||||| | ||||||| | Sbjct 130 AAAATTTCCGACTGCGAGCGGCTGGCCGACAGGAACACCTGGTTGTCGCCGGTCAGCACG 71 Query 2462 GCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGA 2521 ||| || | || |||| || |||||| ||||| ||| | ||||||| ||| || Sbjct 70 GCGTCCATGAACGCTTCGCCGGCGAAGTAGTACGTCAGGCCCACCTGGCGGCTTTTCAGG 11 Query 2522 ATATCGCG 2529 || | ||| Sbjct 10 ATGTTGCG 3 >seq2959876 Length=477 Score = 113 bits (124), Expect = 8e-21 Identities = 225/332 (68%), Gaps = 10/332 (3%) Strand=Plus/Minus Query 11013 AACCCTGACACCTGTCCGGAAAATTTGCTGCCGTGGCTGGCGTGGGCGTTTTCTGTCGAC 11072 ||| |||| ||||| |||| | ||||||||||| ||||| ||||| | || || || Sbjct 330 AACGCTGATACCTGCCCGGTACATTTGCTGCCGCATCTGGCATGGGCATGGTCGGTGGAT 271 Query 11073 CGGTGGGATGAGAACTGGCCGGAGGGAACAAAACGTGCCGTTATCCGTGATGCATATTTC 11132 || |||||| | ||| | |||| || ||||| |||| ||| | | |||| | Sbjct 270 CGCTGGGATTACCGATGGACCGAGGCGACCAAACGCGCCGCCATCAAGGCCTCTTATTAC 211 Query 11133 ATTCACTGCCACAAGGGGACTATCGGCGCAATCCGTCGGGTAGTGGAGCCACTCGGCTAT 11192 || || ||||||||| || |||||||| | || || || || ||||| || ||||| Sbjct 210 ATACATGCCCACAAGGGCACCATCGGCGCGTTACGCCGTGTGGTAGAGCCTCTGGGCTAC 151 Query 11193 GTCATCAATGTAACGGAATGGTGGGA-AAGCGGC-------GACCCGCCAGGCACATTCC 11244 | ||| | | | || |||| | | | ||| |||| |||||||| || Sbjct 150 CTGATCGAGATTATCGAGTGGTTCAACATGAGGCCCGAAGGGACC--CCAGGCACCTTTG 93 Query 11245 GGCTTGATATCGGGGTGCTTGAAAGTGGCATTACCGAGGAAATGTATTTCGAAATGGAGC 11304 | | | |||||||| | || | || || || |||||||||||| || |||||| Sbjct 92 CGTTAAAGGTCGGGGTGTTGGACACCGGTATCACTGAGGAAATGTATCAGGAGCTGGAGC 33 Query 11305 GACTGATTGCGGATGCAAAGCCAGCCAGTCGT 11336 | ||||||| || || ||||| | ||| ||| Sbjct 32 GGCTGATTGATGACGCCAAGCCCGTCAGCCGT 1 >seq3084702 Length=3045 Score = 93.3 bits (102), Expect = 8e-15 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 11013 AACCCTGACACCTGTCCGGAAAATTTGCTGCCGTGGCTGGCGTGGGCGTTTTCTGTCGAC 11072 ||| |||| ||||| |||| ||||||||||| ||||| ||||| | || || || Sbjct 2898 AACGCTGATACCTGCCCGGTGCATTTGCTGCCGCATCTGGCCTGGGCTTGGTCGGTGGAT 2839 Query 11073 CGGTGGGATGAGAACTGGCCGGAGGGAACAAAACGTGCCGTTATCCGTGATGCATATTTC 11132 || |||||| | ||| | |||| || || ||||||| ||| | | |||| | Sbjct 2838 CGCTGGGATTACCGATGGACAGAGGCGACCAAGCGTGCCGCCATCAAGGCCTCTTATTAC 2779 Query 11133 ATTCACTGCCACAAGGGGACTATCGGCGCAATCCGTCGGGTAGTGGAGCCACTCGGCTA 11191 || || ||||||||| ||||||||||| | ||||| || || ||||| || ||||| Sbjct 2778 ATCCATGCCCACAAGGGAACTATCGGCGCCTTGCGTCGTGTGGTTGAGCCTCTGGGCTA 2720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 91538893302490