Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq3088503 82.4 2e-11 >seq3088503 Length=21467 Score = 82.4 bits (90), Expect = 2e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 12161 GGCGGGTGGTGGATTCGTGAAATTGGTCTGTTTGATAAAGACGGCGATATGATTGCCGTC 12220 || || ||||||||||| ||||| || ||| ||| |||||||| || | ||||| Sbjct 240 GGTGGATGGTGGATTCGAGAAATAGGCTTGTATGACTCAGACGGCGCCCTGGTAGCCGTA 181 Query 12221 GCCAACTGTGCGGAAACCTATAAGCCGCAGTTACAGGAGGGAAGCGGGCGCGTGCAGGTG 12280 || || || || || ||||||||||| | | | || || ||| ||| || Sbjct 180 GCGAATTGCGCACCAAGCTATAAGCCGCTGATGTCCCAAGGCTCAGGCCGCACGCAAGTC 121 Query 12281 GTGCGCATGATTCTGATTGTCAGCAGTACTGCCGCCGTGACGCTGAAAATTGACCCTTCG 12340 || ||||||| | | |||||| ||| | ||| |||| |||||| || ||||| Sbjct 120 GTTCGCATGAATTTCATTGTCTCCAGCGCAGCCAACGTGGTGCTGAAGATCGACCCCGAC 61 Query 12341 GTAGTGCTGGCAACCCGTCAGTACGTTGATAAT 12373 || || ||||| || || ||||| || ||| || Sbjct 60 GTCGTTCTGGCTACACGCCAGTATGTCGATGAT 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103178929036122