Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq2830298 123 1e-23 seq2744214 84.2 1e-11 >seq2830298 Length=253 Score = 123 bits (136), Expect = 1e-23 Identities = 176/246 (72%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 66250 TCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGA 66307 ||||||| |||||| ||||||| ||||| |||||| ||| || || || || | || Sbjct 9 TCGACGCCGAGCACGCCCTGGATCCTGAATACGCC--GGCAAACTGGGCGTCAACGTTGA 66 Query 66308 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66367 | |||| |||| ||||||||||| || ||||| ||||| || ||| ||| | || Sbjct 67 CGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAAGCCCTCGAAATCACCGACATGCT 126 Query 66368 CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCG 66427 || || || | | | |||| || ||||| |||||||| ||||| ||| Sbjct 127 GGTGCGTTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTGGTACCGAA 186 Query 66428 CGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTC 66487 || || |||||||||| || || |||| ||||| |||||||| || ||||| ||||| Sbjct 187 GGCAGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGCCTGATGTC 246 Query 66488 GCAGGC 66493 ||||| Sbjct 247 CCAGGC 252 >seq2744214 Length=211 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 66094 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66153 |||| |||||| | | ||||||| ||| || ||||| || || || | ||||| Sbjct 3 CCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 62 Query 66154 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66213 | || ||||||||||| || |||||||| || || | |||||| ||| | | | | Sbjct 63 TTGTCGAAATCTACGGTCCTGAATCTTCCGGTAAAACTACTCTGACTCTGTCGGTGATTG 122 Query 66214 CCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACC 66273 || | || || || || | || | || | | ||||||| |||||| ||||||| | Sbjct 123 CCCAGGCGCAAAAAATGGGCGCCACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGATC 182 Query 66274 CTGAGTACGCC 66284 |||| |||||| Sbjct 183 CTGAATACGCC 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231889969746300