Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_029079.1
Length=75339
Score E
Sequences producing significant alignments: (Bits) Value
seq2830298 123 1e-23
seq2744214 84.2 1e-11
>seq2830298
Length=253
Score = 123 bits (136), Expect = 1e-23
Identities = 176/246 (72%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 66250 TCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGA 66307
||||||| |||||| ||||||| ||||| |||||| ||| || || || || | ||
Sbjct 9 TCGACGCCGAGCACGCCCTGGATCCTGAATACGCC--GGCAAACTGGGCGTCAACGTTGA 66
Query 66308 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66367
| |||| |||| ||||||||||| || ||||| ||||| || ||| ||| | ||
Sbjct 67 CGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAAGCCCTCGAAATCACCGACATGCT 126
Query 66368 CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCG 66427
|| || || | | | |||| || ||||| |||||||| ||||| |||
Sbjct 127 GGTGCGTTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTGGTACCGAA 186
Query 66428 CGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTC 66487
|| || |||||||||| || || |||| ||||| |||||||| || ||||| |||||
Sbjct 187 GGCAGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGCCTGATGTC 246
Query 66488 GCAGGC 66493
|||||
Sbjct 247 CCAGGC 252
>seq2744214
Length=211
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 66094 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66153
|||| |||||| | | ||||||| ||| || ||||| || || || | |||||
Sbjct 3 CCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 62
Query 66154 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66213
| || ||||||||||| || |||||||| || || | |||||| ||| | | | |
Sbjct 63 TTGTCGAAATCTACGGTCCTGAATCTTCCGGTAAAACTACTCTGACTCTGTCGGTGATTG 122
Query 66214 CCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACC 66273
|| | || || || || | || | || | | ||||||| |||||| ||||||| |
Sbjct 123 CCCAGGCGCAAAAAATGGGCGCCACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGATC 182
Query 66274 CTGAGTACGCC 66284
|||| ||||||
Sbjct 183 CTGAATACGCC 193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 231889969746300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |