Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2585192 183 3e-41 seq116363 178 1e-39 seq1518898 122 8e-23 >seq2585192 Length=178 Score = 183 bits (202), Expect = 3e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| || || || || |||||||| ||||| || | ||| Sbjct 17 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 76 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| || || || | |||||||||||||||||||||| | |||||||| ||| Sbjct 77 ATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 136 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||||||||||||| ||||| ||||||||||| Sbjct 137 CAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATC 177 Score = 183 bits (202), Expect = 3e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| | |||| Sbjct 177 GATCTCCCTCTCATGGCCCTCCCCCCGTGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 118 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || || || |||||||||||||| | || ||||| ||| Sbjct 117 GGGGAGCTGTCCTGCCAGTTGTACCAGCGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 58 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || |||||||| |||||||| || || Sbjct 57 AACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACA 17 >seq116363 Length=44347 Score = 178 bits (196), Expect = 1e-39 Identities = 136/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| | |||| Sbjct 21537 GATCTCCCTCTCATGGCCCTCCCCCCGTGCCACGCCCTCTGCCAGTTCTACGTGGAGAAT 21596 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || || || ||||||||||||| | || ||||| ||| Sbjct 21597 GGGGAGCTGTCCTGCCAGTTGTACCAGCGGCCGGGAGACATGGGCCTGGGTGTGCCCTTC 21656 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || |||||||| |||||||| || || Sbjct 21657 AACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACA 21697 Score = 178 bits (196), Expect = 1e-39 Identities = 136/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| || || || || |||||||| ||||| || | ||| Sbjct 21697 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 21638 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||||| || || || | |||||||||||||||||||||| | |||||||| ||| Sbjct 21637 ATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAGAACTGG 21578 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||||||||||||| ||||| ||||||||||| Sbjct 21577 CAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATC 21537 >seq1518898 Length=124 Score = 122 bits (134), Expect = 8e-23 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 6719 CCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGA 6778 |||||| | |||||||| |||||||||| ||||||||||||||| ||||| ||||||||| Sbjct 1 CCATTCACCACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGA 60 Query 6779 TCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825 || || || ||||| || |||| | ||| |||||||||| |||||| Sbjct 61 TCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTCATTAGGGTT 107 Score = 122 bits (134), Expect = 8e-23 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 |||||| |||||||||| ||| | |||| || ||||| || || ||||||||||| ||| Sbjct 107 AACCCTAATGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCTCTCATG 48 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626 || ||||||||||||||| |||||||||| |||||||| | |||||| Sbjct 47 GCCCTCCCCCCGTGCCACGCCCTCTGCCAGTTCTACGTGGTGAATGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431392332429893