Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq2585192 183 3e-41
seq116363 178 1e-39
seq1518898 122 8e-23
>seq2585192
Length=178
Score = 183 bits (202), Expect = 3e-41
Identities = 137/161 (85%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || |||||||| |||||||| || || || || |||||||| ||||| || | |||
Sbjct 17 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 76
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||||||||| || || || | |||||||||||||||||||||| | |||||||| |||
Sbjct 77 ATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 136
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 137 CAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATC 177
Score = 183 bits (202), Expect = 3e-41
Identities = 137/161 (85%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| | ||||
Sbjct 177 GATCTCCCTCTCATGGCCCTCCCCCCGTGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 118
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|||||||||||||||||| | || || || |||||||||||||| | || ||||| |||
Sbjct 117 GGGGAGCTGTCCTGCCAGTTGTACCAGCGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 58
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || || || |||||||| |||||||| || ||
Sbjct 57 AACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACA 17
>seq116363
Length=44347
Score = 178 bits (196), Expect = 1e-39
Identities = 136/161 (84%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| | ||||
Sbjct 21537 GATCTCCCTCTCATGGCCCTCCCCCCGTGCCACGCCCTCTGCCAGTTCTACGTGGAGAAT 21596
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|||||||||||||||||| | || || || ||||||||||||| | || ||||| |||
Sbjct 21597 GGGGAGCTGTCCTGCCAGTTGTACCAGCGGCCGGGAGACATGGGCCTGGGTGTGCCCTTC 21656
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || || || |||||||| |||||||| || ||
Sbjct 21657 AACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACA 21697
Score = 178 bits (196), Expect = 1e-39
Identities = 136/161 (84%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || |||||||| |||||||| || || || || |||||||| ||||| || | |||
Sbjct 21697 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 21638
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
|||||||||| || || || | |||||||||||||||||||||| | |||||||| |||
Sbjct 21637 ATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAGAACTGG 21578
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 21577 CAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATC 21537
>seq1518898
Length=124
Score = 122 bits (134), Expect = 8e-23
Identities = 91/107 (85%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 6719 CCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGA 6778
|||||| | |||||||| |||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 1 CCATTCACCACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGA 60
Query 6779 TCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825
|| || || ||||| || |||| | ||| |||||||||| ||||||
Sbjct 61 TCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTCATTAGGGTT 107
Score = 122 bits (134), Expect = 8e-23
Identities = 91/107 (85%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579
|||||| |||||||||| ||| | |||| || ||||| || || ||||||||||| |||
Sbjct 107 AACCCTAATGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCTCTCATG 48
Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626
|| ||||||||||||||| |||||||||| |||||||| | ||||||
Sbjct 47 GCCCTCCCCCCGTGCCACGCCCTCTGCCAGTTCTACGTGGTGAATGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 431392332429893
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |