Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq153451 187 2e-42
seq222920 114 1e-20
seq35684 111 1e-19
seq316642 100 2e-16
seq2585192 87.8 1e-12
seq116363 84.2 2e-11
>seq153451
Length=22869
Score = 187 bits (206), Expect = 2e-42
Identities = 195/256 (76%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334
|| ||||||||| | ||||| |||||||||||| | || || ||||||||||||||||
Sbjct 9083 CCCCAAGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 9142
Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394
||| | || | ||| |||||||| || ||||| || ||||| || || || |||
Sbjct 9143 CTCACCTACAGCGAGAGCCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 9202
Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454
|| || |||||||||| ||| |||| || ||||||||||| || || ||||| |||
Sbjct 9203 ATCACCCAGCTTGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAGGAT 9262
Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514
|| | ||| |||||||| | ||||| | ||||| ||||| ||||| ||||||||||
Sbjct 9263 GAGGCGTGTTACAAGTGCCTCTTTAATATCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 9322
Query 1515 TGTCTAACCCTTTTTG 1530
|| || || || ||||
Sbjct 9323 TGCCTCACTCTCTTTG 9338
>seq222920
Length=4773
Score = 114 bits (126), Expect = 1e-20
Identities = 125/166 (75%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 2524 CTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAAT 2583
|| ||| | |||||||| ||||| |||||||| |||||| | |||||||||||| ||
Sbjct 3329 CTATTTGTGACAAGGATCATGCAAGAATTTGAAAGTGATATGTTTTTCCCAGAAATTGAT 3270
Query 2584 CTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAA 2643
|| ||||| |||| ||| | |||| ||||||||||||| | || || || |||
Sbjct 3269 TTTGAAAAATATAAACTTCTTCCAGAATACCCAGGTGTTCCCTTGGATGTCCAGGAGGAA 3210
Query 2644 AATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689
|| || |||| ||| ||||||| |||||||||| || | ||||
Sbjct 3209 AAAGGCATTAAGTACGAATTTGAAGTATATGAAAAGAACAATTAAT 3164
>seq35684
Length=2433
Score = 111 bits (122), Expect = 1e-19
Identities = 187/271 (69%), Gaps = 16/271 (6%)
Strand=Plus/Plus
Query 2434 CCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAG 2493
|||||||||| | | | || || | | |||||||| | || || || ||||||||| ||
Sbjct 11 CCAGAATTAACAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTCTATAAG 70
Query 2494 GAGAGCATT-ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATT 2552
|| ||| ||||| | || | | | || ||| | |||||||| ||||| ||||
Sbjct 71 GAAGCCATGGACAAGC-CAGGCCATCTTAGACTATTTGTGACAAGGATCATGCAAGAATT 129
Query 2553 TGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATT 2612
|||| ||||||| | |||||||||||| || || ||||| |||| ||| | ||||
Sbjct 130 TGAAAGTGATACGTTTTTCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATA 189
Query 2613 TCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAA--------------TGGAATTAGATAC 2658
||||||||||| | | || || || ||||| || |||| |||
Sbjct 190 CCCAGGTGTTCCTTTGGATGTCCAGGAGGAAAAGTACATTATTGTACAGGCATTAAGTAC 249
Query 2659 AAATTTGAGATATATGaaaaaaaaaCATAAT 2689
|||||||| |||||||||| || | ||||
Sbjct 250 AAATTTGAAGTATATGAAAAGAACAATTAAT 280
>seq316642
Length=11847
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | || || || |||||||||||||| || || |||||||||
Sbjct 223 GTGGTGGAGGAGCTCTTCAGGGACGGCGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 282
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| || || || ||||| ||||| |||||||| | | || | |||| || |||| |
Sbjct 283 TTCGGAGGGGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 342
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| || ||||||||| ||
Sbjct 343 ATCGCGCTGTGGATGACCGA 362
>seq2585192
Length=178
Score = 87.8 bits (96), Expect = 1e-12
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 118545 GTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACC 118604
||| ||||||||||| || | || |||||||| | || || || |||||||| ||
Sbjct 16 GTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCC 75
Query 118605 CATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664
||||||| | || | ||||||||| ||||| || |||||||| || | || || |||||
Sbjct 76 CATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTG 135
Query 118665 ACTTATGATGTGACATGGAGGCAGAACCATG 118695
| | | ||| || || || || |||||
Sbjct 136 GCAGAGGGCGTGGCACGGGGGGAGGGCCATG 166
>seq116363
Length=44347
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 118545 GTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACC 118604
||| ||||||||||| || | || |||||||| | || || || |||||||| ||
Sbjct 21698 GTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCC 21639
Query 118605 CATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664
||||||| | | | ||||||||| ||||| || |||||||| || | || || |||||
Sbjct 21638 CATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAGAACTG 21579
Query 118665 ACTTATGATGTGACATGGAGGCAGAACCATG 118695
| | | ||| || || || || |||||
Sbjct 21578 GCAGAGGGCGTGGCACGGGGGGAGGGCCATG 21548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398875384348204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |