Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq153451 187 2e-42 seq222920 114 1e-20 seq35684 111 1e-19 seq316642 100 2e-16 seq2585192 87.8 1e-12 seq116363 84.2 2e-11 >seq153451 Length=22869 Score = 187 bits (206), Expect = 2e-42 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || ||||||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 9083 CCCCAAGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 9142 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | ||| |||||||| || ||||| || ||||| || || || ||| Sbjct 9143 CTCACCTACAGCGAGAGCCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 9202 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||||||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 9203 ATCACCCAGCTTGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAGGAT 9262 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| | ||||| ||||| ||||| |||||||||| Sbjct 9263 GAGGCGTGTTACAAGTGCCTCTTTAATATCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 9322 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 9323 TGCCTCACTCTCTTTG 9338 >seq222920 Length=4773 Score = 114 bits (126), Expect = 1e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 2524 CTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAAT 2583 || ||| | |||||||| ||||| |||||||| |||||| | |||||||||||| || Sbjct 3329 CTATTTGTGACAAGGATCATGCAAGAATTTGAAAGTGATATGTTTTTCCCAGAAATTGAT 3270 Query 2584 CTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAA 2643 || ||||| |||| ||| | |||| ||||||||||||| | || || || ||| Sbjct 3269 TTTGAAAAATATAAACTTCTTCCAGAATACCCAGGTGTTCCCTTGGATGTCCAGGAGGAA 3210 Query 2644 AATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 || || |||| ||| ||||||| |||||||||| || | |||| Sbjct 3209 AAAGGCATTAAGTACGAATTTGAAGTATATGAAAAGAACAATTAAT 3164 >seq35684 Length=2433 Score = 111 bits (122), Expect = 1e-19 Identities = 187/271 (69%), Gaps = 16/271 (6%) Strand=Plus/Plus Query 2434 CCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAG 2493 |||||||||| | | | || || | | |||||||| | || || || ||||||||| || Sbjct 11 CCAGAATTAACAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTCTATAAG 70 Query 2494 GAGAGCATT-ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATT 2552 || ||| ||||| | || | | | || ||| | |||||||| ||||| |||| Sbjct 71 GAAGCCATGGACAAGC-CAGGCCATCTTAGACTATTTGTGACAAGGATCATGCAAGAATT 129 Query 2553 TGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATT 2612 |||| ||||||| | |||||||||||| || || ||||| |||| ||| | |||| Sbjct 130 TGAAAGTGATACGTTTTTCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATA 189 Query 2613 TCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAA--------------TGGAATTAGATAC 2658 ||||||||||| | | || || || ||||| || |||| ||| Sbjct 190 CCCAGGTGTTCCTTTGGATGTCCAGGAGGAAAAGTACATTATTGTACAGGCATTAAGTAC 249 Query 2659 AAATTTGAGATATATGaaaaaaaaaCATAAT 2689 |||||||| |||||||||| || | |||| Sbjct 250 AAATTTGAAGTATATGAAAAGAACAATTAAT 280 >seq316642 Length=11847 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || || || |||||||||||||| || || ||||||||| Sbjct 223 GTGGTGGAGGAGCTCTTCAGGGACGGCGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 282 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||| ||||| |||||||| | | || | |||| || |||| | Sbjct 283 TTCGGAGGGGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 342 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || ||||||||| || Sbjct 343 ATCGCGCTGTGGATGACCGA 362 >seq2585192 Length=178 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 118545 GTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACC 118604 ||| ||||||||||| || | || |||||||| | || || || |||||||| || Sbjct 16 GTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCC 75 Query 118605 CATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 ||||||| | || | ||||||||| ||||| || |||||||| || | || || ||||| Sbjct 76 CATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTG 135 Query 118665 ACTTATGATGTGACATGGAGGCAGAACCATG 118695 | | | ||| || || || || ||||| Sbjct 136 GCAGAGGGCGTGGCACGGGGGGAGGGCCATG 166 >seq116363 Length=44347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 118545 GTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACC 118604 ||| ||||||||||| || | || |||||||| | || || || |||||||| || Sbjct 21698 GTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCC 21639 Query 118605 CATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 ||||||| | | | ||||||||| ||||| || |||||||| || | || || ||||| Sbjct 21638 CATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAGAACTG 21579 Query 118665 ACTTATGATGTGACATGGAGGCAGAACCATG 118695 | | | ||| || || || || ||||| Sbjct 21578 GCAGAGGGCGTGGCACGGGGGGAGGGCCATG 21548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398875384348204