Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq155098 109 4e-19 seq300236 100 2e-16 seq185925 91.5 1e-13 seq87282 84.2 1e-11 >seq155098 Length=7669 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || ||||| ||||| || || ||||||||||| || || || Sbjct 7440 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 7381 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || || Sbjct 7380 TCGGATACAATAGAAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 7321 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || ||||| ||||| ||||||||||| ||||| ||||| || ||| Sbjct 7320 CAGCAAATACTGATCTTTGCTGGCAAGCAACTGGAAGATGAACGTACTTTGTCTGACTAC 7261 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||| ||||| |||||||| | ||| |||| || || Sbjct 7260 AGCATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAG 7223 >seq300236 Length=7644 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || |||||||| || ||||| |||||||| || || || ||| Sbjct 7413 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAG 7472 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || || || || ||||| || | || ||||| || Sbjct 7473 TGACACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGACCA 7532 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || ||||| |||||||| | ||||| | || ||||| Sbjct 7533 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTACAA 7592 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 7593 CATCCAGAAAGAGTCCAC 7610 >seq185925 Length=7279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || ||||| ||||| || || |||||||| || || || || Sbjct 519 AAGATGCAGATTTTCATGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCC 460 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || || || || ||||| | || || || Sbjct 459 TTGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 400 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || | ||| ||||| ||||||||||| | || ||||| || ||| Sbjct 399 CAGCAAAGACAGATCTGTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 340 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| |||| || || Sbjct 339 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAG 302 >seq87282 Length=9775 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || ||||| || | || || |||||||| || || || || Sbjct 2430 AAGATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTAGAGCCC 2489 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || |||||||| | || || || Sbjct 2490 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAGCTCCTCCTGAC 2549 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| | | || | ||| ||||| ||||||||||||| | | ||||| | | || Sbjct 2550 CAACAAAGACTGATCTATGCTGGCAAGCAACTGGAAGACGGATGTACTTT-GAC--CCAC 2606 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| ||| |||| Sbjct 2607 AACATTCAAAAGGAGCCCAC 2626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325286503643588