Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq2585192 143 2e-29
seq116363 138 9e-28
seq1495313 98.7 8e-16
seq118786 87.8 1e-12
seq1518898 82.4 6e-11
>seq2585192
Length=178
Score = 143 bits (158), Expect = 2e-29
Identities = 127/159 (80%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779
|||| ||| || |||||||| ||||| || | |||||||||||||| |||||||| ||
Sbjct 11 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 70
Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839
|| |||||||| || |||| |||||| | |||||| || ||||| || | ||||||
Sbjct 71 AGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 130
Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| || | ||| |||||||| || ||||||||||||
Sbjct 131 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAGA 169
>seq116363
Length=44347
Score = 138 bits (152), Expect = 9e-28
Identities = 126/159 (79%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779
|||| ||| || |||||||| ||||| || | |||||||||||||| |||||||| ||
Sbjct 21703 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 21644
Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839
|| |||||||| || | || |||||| | |||||| || ||||| || | ||||||
Sbjct 21643 AGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAG 21584
Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| || | ||| |||||||| || ||||||||||||
Sbjct 21583 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAGA 21545
>seq1495313
Length=124
Score = 98.7 bits (108), Expect = 8e-16
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 29649 GCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCG 29708
|||| || | ||| | ||||| ||||| ||||||||||| ||||| ||||| || || |
Sbjct 124 GCGGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTG 65
Query 29709 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 29768
| | || | |||| ||| || |||||||| ||||| || | |||||||||||||| |
Sbjct 64 GCTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGA 5
Query 29769 AGGG 29772
||||
Sbjct 4 AGGG 1
>seq118786
Length=8115
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || || ||||| |||| || | ||||| | | ||||| |||||| || ||
Sbjct 2833 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 2774
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| ||||| |||||||| ||||||| ||||| ||||||
Sbjct 2773 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2726
>seq1518898
Length=124
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGG 29892
|||||| ||||| || | ||| |||||||| || |||||||||||| | ||||| ||
Sbjct 9 CACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATCTTTTGG 68
Query 29893 GTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940
||||| ||||||| |||||| | ||||| | |||||| | ||||
Sbjct 69 ATTCCAAGCACACAGGATGATTCTTCTGTCATTAGGGTTGGTTTTGAT 116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 390874718459746
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |