Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq28392 145 6e-30 seq227710 131 1e-25 seq194669 89.7 4e-13 seq85459 89.7 4e-13 >seq28392 Length=738 Score = 145 bits (160), Expect = 6e-30 Identities = 269/395 (68%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 4284 AAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCG 4343 ||||| ||||| || || || | ||||||||||||||||| ||||| ||||| | | Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 4344 TTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATAC 4403 || || || | | || | | | | || || || || || || || ||| Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 4404 TGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAAC 4463 || |||| | ||| || || ||||| | ||||||| || || | || | ||| Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 4464 TCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTA 4523 || |||||||| | || || | |||||| ||||||| | | | || || ||||| Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240 Query 4524 TTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA 4583 | | | || | |||| | || ||||| ||||| |||||||| || ||||||||| Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300 Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643 || ||||| | |||||||| | || ||||| | |||| || || ||||| ||||| Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360 Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 | ||||| || || |||||||| |||||||| || Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 395 >seq227710 Length=3428 Score = 131 bits (144), Expect = 1e-25 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 165 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 106 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| |||||||| || || || || || ||||| |||||| Sbjct 105 TCCTCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 46 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||| ||||||||||| ||||| |||| ||||||||||||| Sbjct 45 AGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGG 4 >seq194669 Length=4388 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || || ||||| || || || || ||||||||||||||||| || || | ||||| ||| Sbjct 1255 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATA 1196 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | ||||| || |||||||| || | ||| || | ||||||||| Sbjct 1195 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 1137 >seq85459 Length=10496 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || |||||||||||||||||||| ||||| || ||| Sbjct 6859 TCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 6800 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || |||| ||||| || | |||||||| Sbjct 6799 ATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTC 6756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410974928719163