Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 145 6e-30
seq227710 131 1e-25
seq194669 89.7 4e-13
seq85459 89.7 4e-13
>seq28392
Length=738
Score = 145 bits (160), Expect = 6e-30
Identities = 269/395 (68%), Gaps = 0/395 (0%)
Strand=Plus/Plus
Query 4284 AAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCG 4343
||||| ||||| || || || | ||||||||||||||||| ||||| ||||| | |
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 4344 TTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATAC 4403
|| || || | | || | | | | || || || || || || || |||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 4404 TGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAAC 4463
|| |||| | ||| || || ||||| | ||||||| || || | || | |||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 4464 TCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTA 4523
|| |||||||| | || || | |||||| ||||||| | | | || || |||||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240
Query 4524 TTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA 4583
| | | || | |||| | || ||||| ||||| |||||||| || |||||||||
Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300
Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643
|| ||||| | |||||||| | || ||||| | |||| || || ||||| |||||
Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360
Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678
| ||||| || || |||||||| |||||||| ||
Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 395
>seq227710
Length=3428
Score = 131 bits (144), Expect = 1e-25
Identities = 126/162 (78%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
|| ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | ||
Sbjct 165 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 106
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
|||| | ||||| ||||||| |||||||| || || || || || ||||| ||||||
Sbjct 105 TCCTCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 46
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
||| ||||||||||| ||||| |||| |||||||||||||
Sbjct 45 AGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGG 4
>seq194669
Length=4388
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991
|| || ||||| || || || || ||||||||||||||||| || || | ||||| |||
Sbjct 1255 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATA 1196
Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050
|| |||| || || | ||||| || |||||||| || | ||| || | |||||||||
Sbjct 1195 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 1137
>seq85459
Length=10496
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| ||||| || || || || |||||||||||||||||||| ||||| || |||
Sbjct 6859 TCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 6800
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || || |||| ||||| || | ||||||||
Sbjct 6799 ATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTC 6756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410974928719163
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |