Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2585192 136 3e-27 seq116363 132 3e-26 seq1495313 102 6e-17 >seq2585192 Length=178 Score = 136 bits (150), Expect = 3e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273 |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || || Sbjct 11 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 70 Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333 || |||||||| ||||||| |||||| | ||| || || ||||| |||| ||||| Sbjct 71 AGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 130 Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| || | |||||||||||| || || |||||||| Sbjct 131 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 168 >seq116363 Length=44347 Score = 132 bits (146), Expect = 3e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273 |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || || Sbjct 21703 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 21644 Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333 || |||||||| |||| || |||||| | ||| || || ||||| |||| ||||| Sbjct 21643 AGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAG 21584 Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| || | |||||||||||| || || |||||||| Sbjct 21583 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 21546 >seq1495313 Length=124 Score = 102 bits (112), Expect = 6e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 27143 GCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCG 27202 |||| || | ||||| |||||| ||||| || |||||||| ||||| ||||| || || | Sbjct 124 GCGGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTG 65 Query 27203 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 27262 | | || | |||| ||| || |||||||| ||||| || | |||||||||||||| | Sbjct 64 GCTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGA 5 Query 27263 AGGG 27266 |||| Sbjct 4 AGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355598495306441