Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq2585192 136 3e-27
seq116363 132 3e-26
seq1495313 102 6e-17
>seq2585192
Length=178
Score = 136 bits (150), Expect = 3e-27
Identities = 125/158 (79%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273
|||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || ||
Sbjct 11 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 70
Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333
|| |||||||| ||||||| |||||| | ||| || || ||||| |||| |||||
Sbjct 71 AGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 130
Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
||||| || | |||||||||||| || || ||||||||
Sbjct 131 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 168
>seq116363
Length=44347
Score = 132 bits (146), Expect = 3e-26
Identities = 124/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273
|||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || ||
Sbjct 21703 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 21644
Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333
|| |||||||| |||| || |||||| | ||| || || ||||| |||| |||||
Sbjct 21643 AGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAG 21584
Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
||||| || | |||||||||||| || || ||||||||
Sbjct 21583 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 21546
>seq1495313
Length=124
Score = 102 bits (112), Expect = 6e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 27143 GCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCG 27202
|||| || | ||||| |||||| ||||| || |||||||| ||||| ||||| || || |
Sbjct 124 GCGGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTG 65
Query 27203 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 27262
| | || | |||| ||| || |||||||| ||||| || | |||||||||||||| |
Sbjct 64 GCTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGA 5
Query 27263 AGGG 27266
||||
Sbjct 4 AGGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355598495306441
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |