Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_030908.1
Length=36938
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 114 3e-21
seq156999 100 6e-17
>seq3088379
Length=10556
Score = 114 bits (126), Expect = 3e-21
Identities = 269/403 (67%), Gaps = 10/403 (2%)
Strand=Plus/Plus
Query 24829 GCAAATGGCCGACCGCATCCAAATGGTCACCAGCAGCACCGCCGAGTATGAGCAAGTGCA 24888
||| ||| | || ||| | ||||| |||||||| |||||| | | || ||
Sbjct 9603 GCAGATGTCGGATCGCCTTGGAATGGCGACCAGCAGTGTAAGCGAGTACAACCTGGTTCA 9662
Query 24889 GGCCCGGTTGCTGGAGACGGCCAGCCGCACCTACCGGCCGCTGGCGGAAGCCCAGGAGCT 24948
| ||| | || || || || | || |||||||| || || || ||||| || || ||
Sbjct 9663 AGACCGCCTCCTTGACACAGCGAAGCGTACCTACCGCCCACTCGCTGAAGCACAAGAACT 9722
Query 24949 ATACATCCGTACTGCCGACAGCCTGAAGTCACTGCGGTACACCACCGAGCAAGCGCTGGA 25008
|||||||| || | || ||||| || || || | |||| |||| || ||||||||
Sbjct 9723 GTACATCCGCACATCGGATAGCCTTAAATCGATGGGCTACAACACCAGCCAGGCGCTGGA 9782
Query 25009 CATTACCGATTCGTTTTC--CTTCCTGCTGGTAACTAACGCCGCGTCGGCGGACCGTGCG 25066
| | || | |||| ||| || |||| || ||| |||| || || || |
Sbjct 9783 TGTGATGGA--CAGTTTCAGCTTTCTTTTGGTGACCAACTCCGCATCAGCAGAAAA---G 9837
Query 25067 GCGAGT---GCCATCGACGCCTACTCGAAATCGATCCAGACCGGCAAGGTCAGCTCTGAC 25123
|| ||| || ||||| |||||||||||| | |||| || |||||||| ||||
Sbjct 9838 GCCAGTTCGGCAATCGATGCCTACTCGAAAGCACTCCAAACTGGCAAGGTTGAGGCTGAT 9897
Query 25124 GCCTGGCAGTCGATCATGGCCGCCATGCCCAGCCTGGTGAACGCCCTGGCGGAGTCCACC 25183
| |||||| | ||| | || |||||||| | | || || || | || | ||||||
Sbjct 9898 GGATGGCAGGCCATCCTTGCGGCCATGCCTACTGTTGTCGACACCATTGCCAAATCCACC 9957
Query 25184 GGCAAGAGCACTGAGGAAATCCGCAAGCTGGGCATCGAGGGCA 25226
|| |||| |||| || ||||||| || || | ||||||
Sbjct 9958 GGGAAGACTGCTGAAGAGATCCGCAGCCTTGGAGCCCAGGGCA 10000
>seq156999
Length=6365
Score = 100 bits (110), Expect = 6e-17
Identities = 174/248 (70%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 11460 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACGCAACAACT 11519
|||| |||||| | || ||| ||||||||||||||||| || || |||| | |
Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992
Query 11520 GGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATACCG 11579
|||| ||||||||| || | | ||| | | ||| ||| |||||||| || |||||
Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052
Query 11580 CACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTATC-GCA-AGGTCCACGG 11637
| | ||||| ||||||||| ||| ||| ||||||||| ||| | ||| | | || ||
Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAG--CATGG 4110
Query 11638 CCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACACCCG 11697
||| || || | | | ||| |||||||| || || ||||||||||||
Sbjct 4111 GCTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGC 4170
Query 11698 CGCATATG 11705
||| ||||
Sbjct 4171 CGCCTATG 4178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113749289875800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |