Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_030931.1
Length=41871
Score E
Sequences producing significant alignments: (Bits) Value
seq3080761 432 1e-116
seq277625 116 1e-21
seq3087968 91.5 4e-14
seq3088492 86.0 2e-12
>seq3080761
Length=2265
Score = 432 bits (478), Expect = 1e-116
Identities = 917/1342 (68%), Gaps = 44/1342 (3%)
Strand=Plus/Plus
Query 57 GATTATGCCACGTCGATCCATTCGGCGCCCCGACTGTCCCGGTAGAGATCCGTCATCTTC 116
|||||||||||||||||||| || ||||| || ||||| ||||| || || ||||| |
Sbjct 292 GATTATGCCACGTCGATCCACTCAGCGCCTCGGCTGTCTCGGTACAGGTCGGTCATAGTG 351
Query 117 GCGGAGCGGTGGCCGAGCAGCCGTTGCGCATCGCGCCCTTCTTCTTCATGAAGCCTGGCA 176
|| || ||||| || |||| | |||||||| || |||||| ||| ||||| | ||
Sbjct 352 GCCGAACGGTGCCCCAGCAACTTCTGCGCATCACGGCCTTCTAGTTCGTGAAGTCGTGCG 411
Query 177 GCCAGGGAACGCATCTCATGGAAGCTTGGCGGGCTGGCG-CCGAAATCGA-GTCCATGTT 234
|| ||||| ||| || || ||| || || |||||| |||||| | | |||| ||
Sbjct 412 GCGAGGGATCGCTGTTCGTGAAAGGACGGTGG-CTGGCGGCCGAAAGTTATGCCCATCTT 470
Query 235 TTTTCGCCGCCCT-GTCCCTCGCATCAGCGAACGCGGCGCTTATGGTGTCCAGCATAATC 293
||||| | | ||| | ||| |||||||| || | ||| | |||||||||| | |
Sbjct 471 CA--CGCCGGCTTTGTCGCGCGCTTCAGCGAAGGCAGAGCTCAGCGTGTCCAGCACCAAC 528
Query 294 GGCTGCCCAGCCTTGGCACGACT----GATCGTGCGGTGATGATGGATCATGTAGCGGGA 349
||||| || ||||| || || | | | |||| ||| || | || || | ||
Sbjct 529 GGCTGGCCCGCCTTTGCCCGGCCCGAAGCTTGTGC----ATGGTGCACCAGGTGTTGTGA 584
Query 350 AAGAACCCTCCCTCGGCATGATTTGATCACTGAGGCCAGATCGAGACCAAG-GACAGCCA 408
||||| | | |||||| || || || | || |||||| || || | ||| | |
Sbjct 585 CAGAACGCGGTCGCGGCATTGCTTTATTACGGTGGACAGATCCAGTCCGACTGACT-CGA 643
Query 409 GACCAATCGACGTGCTTATACGAAGGCGCATTCCCGTCTTCGACTGAACAACCTGCAGGT 468
| | || || ||||| || || || | || ||||| |||||||| || ||||||
Sbjct 644 GGCGAAGCGCGGTGCTGATCCGCAGCCTGGCCCCGGTCTTGGACTGAACGACATGCAGGA 703
Query 469 ATCCGTCCTGCTCGTCCTTGAACTGCATTGCTGCAAGATCCTCCCGCCTCTGGCCGGTAA 528
| ||||| ||| |||||||||| |||||| ||||| ||| || |||| ||||||||| |
Sbjct 704 AGCCGTCGTGCACGTCCTTGAAAAGCATTGATGCAATATCGTCACGCCGCTGGCCGGTGA 763
Query 529 TAACCGCCAGTTCCATGGCTCGTTTCAACCAGGGCTGTTTCGCCTCGGCATAGATCAGAC 588
|||||||||||||| || | | ||| || | | || || | ||||||
Sbjct 764 GCACCGCCAGTTCCATTGCCCTGCGAAGCCACGGTTTCGTGGCTTCCTCGTAGATCGCCT 823
Query 589 GCCATGTCTCCAGAGTCAGGCGCTCGCGCTTGATTTTCACCCGCGCCGCCTTCGTCACCT 648
||| ||||| ||||| || ||||||||||| ||||||||||| ||||| |||||||
Sbjct 824 TCCAAAGTTCCAGCGTCAGCCGTTCGCGCTTGATGTTCACCCGCGCTGCCTTGGTCACCT 883
Query 649 CCACCGGGTTTTTGTCAGTCCATCCGGCCGCCATCGACTCCATGAAAACATCCCGCAGAA 708
| |||||||| ||| | ||| || |||| || ||| ||| || || |||| |
Sbjct 884 CGACCGGGTTGGCGTCCGCCCACCCCCGCGCCTGCGCCTCGGCGAACACGTCTCGCAACA 943
Query 709 GGGATCGCATGGCTCGGGCCATTTGTGCTTTCCCTTCCTTCGCCATCTCCGAGAAGTAGC 768
| || ||||| || | |||||| || || || || || || ||||| ||| | |||
Sbjct 944 GCGAACGCATTGCCCTGGCCATCTGCGCCTTTCCCTCTTTGGCCATGCCCGTCAGGTAAT 1003
Query 769 CGGCCACATCAATGGTCCCGATATCCCGGATGTCCATCGTTCCGAA-CCTGGCGCGCAGC 827
|||||||||| || || ||| ||| || || ||| || || ||| || |||
Sbjct 1004 CGGCCACATCCATCGTTGTGATGTCCTTAATCCCCTTCGAGCCAAAGACTGCCG-TCAGG 1062
Query 828 CGTTTCAGGCGCAT-CCGA--GTATTACGGACACTGGCCGCCGCCAGGCCGCGCTCGGCG 884
|| || || ||||| || | | ||| | ||| |||| ||| |||||||||
Sbjct 1063 CGGTTTAGCCGCATACCCACGTTTTTATTG---CTGCTTGCCGACAGCTTCCGCTCGGCG 1119
Query 885 TAGATCTTTTCGTACTCGATGAGCCAGTC----GTCAAATAGCCGCGGCGGACGTGATGG 940
| | || ||| ||| ||||| || ||| | ||| |||| || |
Sbjct 1120 AACAGCTCGCGGTATTCGTCTAGCCACTCCGAGAACAATTTGCC-AGGCG---CTGGCGC 1175
Query 941 CTCAGAATTGAGCCTGTCGGCGATAGTCGGCTGAAGCGCTTCCGTGTGGTTTGCTTCGAT 1000
| || ||| | ||| || | || || | | || || | |||||| || |||
Sbjct 1176 CGGAGTGCTGATGCGGTCAGCCAGCGTTGGTTTGATGGCGTCTGCGTGGTTGGCGGCGAC 1235
Query 1001 CGCTTCCCTAATCGCGCGAGCCTTGTCCTTGCCCAGGCCGAACATCCGGCCGCTTACTGG 1060
|| || | ||| || |||| ||||| ||||||||||| | || ||||| | |||
Sbjct 1236 GGCCTCTCGAATGGCCGCCTCCTTATCCTTACCCAGGCCGAATACGCGACCGCTGATTGG 1295
Query 1061 ATCTCGATAGGCGTAATAGGTTACGCCTGACCGAGAGTCCGTCTTCTTGTACAGGTTTGG 1120
|| || |||| |||||| || ||||| || | ||| || || ||| || || ||
Sbjct 1296 GTCGCGGTAGGTGTAATAAGTGACGCCGTTTCGGGCGTCAGTTTTACGGTAGAGATTGGG 1355
Query 1121 GGGGAGGTCTTTTGACCCCTCTTTACGCGGCCTTGGTGCCATGGCGTGCGCTCTTAATGC 1180
||| ||||| |||||||| ||||||||||| || ||||||||| || |||| || |
Sbjct 1356 GGGTAGGTCCTTTGACCCGGTGTTACGCGGCCTGGGCGCCATGGCGGGCTCTCTCTATTC 1415
Query 1181 GGGATATCAGACTGTCGCC--AGGTGCGGAGCGTTTGGCGG--GCTCTTGACTGCTG-TA 1235
| ||||| ||| | || | | ||| ||| ||| | |||| || | ||| ||
Sbjct 1416 TGCTGATCAGGCTGCCCCCTGTGATTCGG-GCG---GGCTGCTGCTCAGGA-TCCTGATA 1470
Query 1236 CTCCGCATCCGGGCTC-ACGTAGTAGCTTCGACCATGCTTTACGGGTGCAGGGATAATAC 1294
| || ||| | ||| || |||||| | || || |||||||||||| ||||| | || |
Sbjct 1471 ATGTGCGTCC-GACTCTACATAGTAGTTGCGGCCGTGCTTTACGGGTACAGGGTTGATTC 1529
Query 1295 AGCCATCCCTTGCCCACCTGCGGAGGGTGTTGATACTCGGCGGCGTCCTGAAGTGCTCAG 1354
||| |||| |||||| |||| ||||||||| || || ||||| |||| | | |
Sbjct 1530 GGCCCTCCCGTGCCCATTTGCGTAGGGTGTTGGGGCTTGGTGGCGTTTTGAACTCGGCCG 1589
Query 1355 CCGCCCATTCTTCTAGGGTTAC 1376
|||||||||| |||||||| ||
Sbjct 1590 CCGCCCATTCATCTAGGGTGAC 1611
>seq277625
Length=52836
Score = 116 bits (128), Expect = 1e-21
Identities = 139/186 (75%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 7958 CCGCGTCGGAACGCCTCAAGCACCAGTCCGCGCACGCTGCGCACACCCATCTTGAATTTC 8017
||||| ||| | ||||| | ||| ||||| || | |||||||||||||| |||||| |||
Sbjct 45604 CCGCGCCGGTAGGCCTCCATCACTAGTCCACGAATGCTGCGCACACCCAGCTTGAACTTC 45545
Query 8018 GCGTCGTCGAGACGTTTCTCGACGGTCCCTGGGGCGATACCCATGCGCCGCGCGACTTCC 8077
|||||||| | ||| || |||||||| ||| | ||| ||||| |||| |||| ||
Sbjct 45544 GCGTCGTCCAAACGCTTTGAGACGGTCCTTGGAGTGATGCCCATCAGCCGTGCGATCTCT 45485
Query 8078 TTTGCTGTC-AGTTCGCTGGCGCTCCAGGCCGTGGCTTCGAGTTCTCGCGGCGCGAGACC 8136
|| || ||| ||| |||| ||| || |||||||| || ||||| || || || ||
Sbjct 45484 TTAGCGGTCAAGTCTGCTGCCGC-GTAGAGAGTGGCTTCCAGCTCTCGGGGGGCAAGGCC 45426
Query 8137 AAGGCC 8142
||||
Sbjct 45425 TTGGCC 45420
>seq3087968
Length=6546
Score = 91.5 bits (100), Expect = 4e-14
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 5913 GCTGGGTTCTCGACGATATAGCCGAGGGCGCGGATCCGCTTCTCCTCGGCGTTGAACGCG 5972
|| ||||||||||| ||||| |||||||| | | | | || |||||||||| |||
Sbjct 1230 GCGGGGTTCTCGACTTCGTAGCCCAGGGCGCGCAGCTGGTCGGCCACGGCGTTGAAGGCG 1171
Query 5973 GGGTAGTTGAAGTCGGGAATGCCGGTCATGGGGCCGGACAAGTAGACGCGATG 6025
|||||||||||||| ||||| ||||| || |||| || ||||||||| ||
Sbjct 1170 GGGTAGTTGAAGTCCTCGATGCCCGTCATCGGCCCGGCCACGTAGACGCGGTG 1118
>seq3088492
Length=18035
Score = 86.0 bits (94), Expect = 2e-12
Identities = 170/247 (69%), Gaps = 6/247 (2%)
Strand=Plus/Minus
Query 14613 TCTGTCTTTGAGTTCCATGTTTAGCATTCTAAACATCTGGCGGTTTAGATAACTTG-CGC 14671
|| |||||||| |||||| ||||| |||||||||| | |||||||||||||| |
Sbjct 6261 TCGGTCTTTGAATTCCATATTTAGGATTCTAAACAAATCAGTGTTTAGATAACTTGCCTT 6202
Query 14672 GTCTAGGTTTATTTTTCTAAACTCGCGAAAAACCAAGGAGCCAGCCAAATGACCTACGAA 14731
|| || ||| | |||||||||| | ||| |||| ||| |||||||||||
Sbjct 6201 GTGTA-GTTAAGAACTCTAAACTCGGCGTAGACCCTGGAGACAGAACCATGACCTACGAC 6143
Query 14732 GAGGCGCTCACCCATTTCAAAACGGGGCGCGCCATTGCTTTGGCCTTGGGGGTGAGTCCT 14791
|| || || || |||||| || || ||||| |||| ||| |||| |||| ||
Sbjct 6142 GAAGCACTGACACATTTCGGCACTGGCCGCGCTATTGGCGACGCCCTGGGCGTGA--CCA 6085
Query 14792 G--GGCGGATTTCCCAGTGCAAGTCGGAGGGTGGATTTTCGTACCAGCACCAATGCGTGC 14849
| | || | || |||||| || || || || || |||| |||||||| |
Sbjct 6084 GCAGCCGCGTATCTCAGTGCCGCACGACCGGCGGGTTCTCCTACCCAATGCAATGCGTCC 6025
Query 14850 TGGAAAA 14856
|||||||
Sbjct 6024 TGGAAAA 6018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128955936134806
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |