Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq3080761 432 1e-116 seq277625 116 1e-21 seq3087968 91.5 4e-14 seq3088492 86.0 2e-12 >seq3080761 Length=2265 Score = 432 bits (478), Expect = 1e-116 Identities = 917/1342 (68%), Gaps = 44/1342 (3%) Strand=Plus/Plus Query 57 GATTATGCCACGTCGATCCATTCGGCGCCCCGACTGTCCCGGTAGAGATCCGTCATCTTC 116 |||||||||||||||||||| || ||||| || ||||| ||||| || || ||||| | Sbjct 292 GATTATGCCACGTCGATCCACTCAGCGCCTCGGCTGTCTCGGTACAGGTCGGTCATAGTG 351 Query 117 GCGGAGCGGTGGCCGAGCAGCCGTTGCGCATCGCGCCCTTCTTCTTCATGAAGCCTGGCA 176 || || ||||| || |||| | |||||||| || |||||| ||| ||||| | || Sbjct 352 GCCGAACGGTGCCCCAGCAACTTCTGCGCATCACGGCCTTCTAGTTCGTGAAGTCGTGCG 411 Query 177 GCCAGGGAACGCATCTCATGGAAGCTTGGCGGGCTGGCG-CCGAAATCGA-GTCCATGTT 234 || ||||| ||| || || ||| || || |||||| |||||| | | |||| || Sbjct 412 GCGAGGGATCGCTGTTCGTGAAAGGACGGTGG-CTGGCGGCCGAAAGTTATGCCCATCTT 470 Query 235 TTTTCGCCGCCCT-GTCCCTCGCATCAGCGAACGCGGCGCTTATGGTGTCCAGCATAATC 293 ||||| | | ||| | ||| |||||||| || | ||| | |||||||||| | | Sbjct 471 CA--CGCCGGCTTTGTCGCGCGCTTCAGCGAAGGCAGAGCTCAGCGTGTCCAGCACCAAC 528 Query 294 GGCTGCCCAGCCTTGGCACGACT----GATCGTGCGGTGATGATGGATCATGTAGCGGGA 349 ||||| || ||||| || || | | | |||| ||| || | || || | || Sbjct 529 GGCTGGCCCGCCTTTGCCCGGCCCGAAGCTTGTGC----ATGGTGCACCAGGTGTTGTGA 584 Query 350 AAGAACCCTCCCTCGGCATGATTTGATCACTGAGGCCAGATCGAGACCAAG-GACAGCCA 408 ||||| | | |||||| || || || | || |||||| || || | ||| | | Sbjct 585 CAGAACGCGGTCGCGGCATTGCTTTATTACGGTGGACAGATCCAGTCCGACTGACT-CGA 643 Query 409 GACCAATCGACGTGCTTATACGAAGGCGCATTCCCGTCTTCGACTGAACAACCTGCAGGT 468 | | || || ||||| || || || | || ||||| |||||||| || |||||| Sbjct 644 GGCGAAGCGCGGTGCTGATCCGCAGCCTGGCCCCGGTCTTGGACTGAACGACATGCAGGA 703 Query 469 ATCCGTCCTGCTCGTCCTTGAACTGCATTGCTGCAAGATCCTCCCGCCTCTGGCCGGTAA 528 | ||||| ||| |||||||||| |||||| ||||| ||| || |||| ||||||||| | Sbjct 704 AGCCGTCGTGCACGTCCTTGAAAAGCATTGATGCAATATCGTCACGCCGCTGGCCGGTGA 763 Query 529 TAACCGCCAGTTCCATGGCTCGTTTCAACCAGGGCTGTTTCGCCTCGGCATAGATCAGAC 588 |||||||||||||| || | | ||| || | | || || | |||||| Sbjct 764 GCACCGCCAGTTCCATTGCCCTGCGAAGCCACGGTTTCGTGGCTTCCTCGTAGATCGCCT 823 Query 589 GCCATGTCTCCAGAGTCAGGCGCTCGCGCTTGATTTTCACCCGCGCCGCCTTCGTCACCT 648 ||| ||||| ||||| || ||||||||||| ||||||||||| ||||| ||||||| Sbjct 824 TCCAAAGTTCCAGCGTCAGCCGTTCGCGCTTGATGTTCACCCGCGCTGCCTTGGTCACCT 883 Query 649 CCACCGGGTTTTTGTCAGTCCATCCGGCCGCCATCGACTCCATGAAAACATCCCGCAGAA 708 | |||||||| ||| | ||| || |||| || ||| ||| || || |||| | Sbjct 884 CGACCGGGTTGGCGTCCGCCCACCCCCGCGCCTGCGCCTCGGCGAACACGTCTCGCAACA 943 Query 709 GGGATCGCATGGCTCGGGCCATTTGTGCTTTCCCTTCCTTCGCCATCTCCGAGAAGTAGC 768 | || ||||| || | |||||| || || || || || || ||||| ||| | ||| Sbjct 944 GCGAACGCATTGCCCTGGCCATCTGCGCCTTTCCCTCTTTGGCCATGCCCGTCAGGTAAT 1003 Query 769 CGGCCACATCAATGGTCCCGATATCCCGGATGTCCATCGTTCCGAA-CCTGGCGCGCAGC 827 |||||||||| || || ||| ||| || || ||| || || ||| || ||| Sbjct 1004 CGGCCACATCCATCGTTGTGATGTCCTTAATCCCCTTCGAGCCAAAGACTGCCG-TCAGG 1062 Query 828 CGTTTCAGGCGCAT-CCGA--GTATTACGGACACTGGCCGCCGCCAGGCCGCGCTCGGCG 884 || || || ||||| || | | ||| | ||| |||| ||| ||||||||| Sbjct 1063 CGGTTTAGCCGCATACCCACGTTTTTATTG---CTGCTTGCCGACAGCTTCCGCTCGGCG 1119 Query 885 TAGATCTTTTCGTACTCGATGAGCCAGTC----GTCAAATAGCCGCGGCGGACGTGATGG 940 | | || ||| ||| ||||| || ||| | ||| |||| || | Sbjct 1120 AACAGCTCGCGGTATTCGTCTAGCCACTCCGAGAACAATTTGCC-AGGCG---CTGGCGC 1175 Query 941 CTCAGAATTGAGCCTGTCGGCGATAGTCGGCTGAAGCGCTTCCGTGTGGTTTGCTTCGAT 1000 | || ||| | ||| || | || || | | || || | |||||| || ||| Sbjct 1176 CGGAGTGCTGATGCGGTCAGCCAGCGTTGGTTTGATGGCGTCTGCGTGGTTGGCGGCGAC 1235 Query 1001 CGCTTCCCTAATCGCGCGAGCCTTGTCCTTGCCCAGGCCGAACATCCGGCCGCTTACTGG 1060 || || | ||| || |||| ||||| ||||||||||| | || ||||| | ||| Sbjct 1236 GGCCTCTCGAATGGCCGCCTCCTTATCCTTACCCAGGCCGAATACGCGACCGCTGATTGG 1295 Query 1061 ATCTCGATAGGCGTAATAGGTTACGCCTGACCGAGAGTCCGTCTTCTTGTACAGGTTTGG 1120 || || |||| |||||| || ||||| || | ||| || || ||| || || || Sbjct 1296 GTCGCGGTAGGTGTAATAAGTGACGCCGTTTCGGGCGTCAGTTTTACGGTAGAGATTGGG 1355 Query 1121 GGGGAGGTCTTTTGACCCCTCTTTACGCGGCCTTGGTGCCATGGCGTGCGCTCTTAATGC 1180 ||| ||||| |||||||| ||||||||||| || ||||||||| || |||| || | Sbjct 1356 GGGTAGGTCCTTTGACCCGGTGTTACGCGGCCTGGGCGCCATGGCGGGCTCTCTCTATTC 1415 Query 1181 GGGATATCAGACTGTCGCC--AGGTGCGGAGCGTTTGGCGG--GCTCTTGACTGCTG-TA 1235 | ||||| ||| | || | | ||| ||| ||| | |||| || | ||| || Sbjct 1416 TGCTGATCAGGCTGCCCCCTGTGATTCGG-GCG---GGCTGCTGCTCAGGA-TCCTGATA 1470 Query 1236 CTCCGCATCCGGGCTC-ACGTAGTAGCTTCGACCATGCTTTACGGGTGCAGGGATAATAC 1294 | || ||| | ||| || |||||| | || || |||||||||||| ||||| | || | Sbjct 1471 ATGTGCGTCC-GACTCTACATAGTAGTTGCGGCCGTGCTTTACGGGTACAGGGTTGATTC 1529 Query 1295 AGCCATCCCTTGCCCACCTGCGGAGGGTGTTGATACTCGGCGGCGTCCTGAAGTGCTCAG 1354 ||| |||| |||||| |||| ||||||||| || || ||||| |||| | | | Sbjct 1530 GGCCCTCCCGTGCCCATTTGCGTAGGGTGTTGGGGCTTGGTGGCGTTTTGAACTCGGCCG 1589 Query 1355 CCGCCCATTCTTCTAGGGTTAC 1376 |||||||||| |||||||| || Sbjct 1590 CCGCCCATTCATCTAGGGTGAC 1611 >seq277625 Length=52836 Score = 116 bits (128), Expect = 1e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 7958 CCGCGTCGGAACGCCTCAAGCACCAGTCCGCGCACGCTGCGCACACCCATCTTGAATTTC 8017 ||||| ||| | ||||| | ||| ||||| || | |||||||||||||| |||||| ||| Sbjct 45604 CCGCGCCGGTAGGCCTCCATCACTAGTCCACGAATGCTGCGCACACCCAGCTTGAACTTC 45545 Query 8018 GCGTCGTCGAGACGTTTCTCGACGGTCCCTGGGGCGATACCCATGCGCCGCGCGACTTCC 8077 |||||||| | ||| || |||||||| ||| | ||| ||||| |||| |||| || Sbjct 45544 GCGTCGTCCAAACGCTTTGAGACGGTCCTTGGAGTGATGCCCATCAGCCGTGCGATCTCT 45485 Query 8078 TTTGCTGTC-AGTTCGCTGGCGCTCCAGGCCGTGGCTTCGAGTTCTCGCGGCGCGAGACC 8136 || || ||| ||| |||| ||| || |||||||| || ||||| || || || || Sbjct 45484 TTAGCGGTCAAGTCTGCTGCCGC-GTAGAGAGTGGCTTCCAGCTCTCGGGGGGCAAGGCC 45426 Query 8137 AAGGCC 8142 |||| Sbjct 45425 TTGGCC 45420 >seq3087968 Length=6546 Score = 91.5 bits (100), Expect = 4e-14 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 5913 GCTGGGTTCTCGACGATATAGCCGAGGGCGCGGATCCGCTTCTCCTCGGCGTTGAACGCG 5972 || ||||||||||| ||||| |||||||| | | | | || |||||||||| ||| Sbjct 1230 GCGGGGTTCTCGACTTCGTAGCCCAGGGCGCGCAGCTGGTCGGCCACGGCGTTGAAGGCG 1171 Query 5973 GGGTAGTTGAAGTCGGGAATGCCGGTCATGGGGCCGGACAAGTAGACGCGATG 6025 |||||||||||||| ||||| ||||| || |||| || ||||||||| || Sbjct 1170 GGGTAGTTGAAGTCCTCGATGCCCGTCATCGGCCCGGCCACGTAGACGCGGTG 1118 >seq3088492 Length=18035 Score = 86.0 bits (94), Expect = 2e-12 Identities = 170/247 (69%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 14613 TCTGTCTTTGAGTTCCATGTTTAGCATTCTAAACATCTGGCGGTTTAGATAACTTG-CGC 14671 || |||||||| |||||| ||||| |||||||||| | |||||||||||||| | Sbjct 6261 TCGGTCTTTGAATTCCATATTTAGGATTCTAAACAAATCAGTGTTTAGATAACTTGCCTT 6202 Query 14672 GTCTAGGTTTATTTTTCTAAACTCGCGAAAAACCAAGGAGCCAGCCAAATGACCTACGAA 14731 || || ||| | |||||||||| | ||| |||| ||| ||||||||||| Sbjct 6201 GTGTA-GTTAAGAACTCTAAACTCGGCGTAGACCCTGGAGACAGAACCATGACCTACGAC 6143 Query 14732 GAGGCGCTCACCCATTTCAAAACGGGGCGCGCCATTGCTTTGGCCTTGGGGGTGAGTCCT 14791 || || || || |||||| || || ||||| |||| ||| |||| |||| || Sbjct 6142 GAAGCACTGACACATTTCGGCACTGGCCGCGCTATTGGCGACGCCCTGGGCGTGA--CCA 6085 Query 14792 G--GGCGGATTTCCCAGTGCAAGTCGGAGGGTGGATTTTCGTACCAGCACCAATGCGTGC 14849 | | || | || |||||| || || || || || |||| |||||||| | Sbjct 6084 GCAGCCGCGTATCTCAGTGCCGCACGACCGGCGGGTTCTCCTACCCAATGCAATGCGTCC 6025 Query 14850 TGGAAAA 14856 ||||||| Sbjct 6024 TGGAAAA 6018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128955936134806