Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq28392 217 2e-51 seq58757 127 3e-24 seq141641 116 5e-21 seq273157 105 9e-18 seq85459 105 9e-18 seq2306809 87.8 2e-12 seq2658871 86.0 8e-12 >seq28392 Length=738 Score = 217 bits (240), Expect = 2e-51 Identities = 285/395 (72%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 47877 AAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCA 47936 || || ||||| || || |||| ||| |||||||||||||| ||||||||||| || | Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 47937 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT 47996 | ||| || |||| || | || || ||||||||||| ||||| || || || Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 47997 CTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAAC 48056 ||||||| || ||||| || || || || || || || |||||||| || ||| Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 48057 TCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGA 48116 || ||||| || | || |||| || ||||| | |||| | | || ||| Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240 Query 48117 TACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTA 48176 | ||||| ||||| ||||| | || ||||| ||||| || | ||| |||||||| ||| Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300 Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || | ||| | ||||| ||||| || ||||| ||||| ||||| |||||||| ||||| Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360 Query 48237 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 48271 | ||| ||||| || |||||||| |||||||| || Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 395 >seq58757 Length=22028 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | || Sbjct 18138 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 18197 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 18198 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 18257 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 18258 TTTCTTATACCAT 18270 >seq141641 Length=332 Score = 116 bits (128), Expect = 5e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| ||||||||||| |||||||| || ||||| || || | ||||| ||||| Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 ||| | | || | | |||| | ||||| | || || || || | || || | Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCT 213 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 | |||||||||||||| || ||||| ||||| |||||||| | ||| |||||| ||||| Sbjct 212 CCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATT 153 Query 48703 GGATTGGGAAAATAACAAA 48721 || || || || ||||| Sbjct 152 TAATAGGAAAGATGACAAA 134 >seq273157 Length=43465 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 39430 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 39371 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 39370 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 39311 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 39310 ATGTGTTGTGGTCTTTCAGCC 39290 >seq85459 Length=10496 Score = 105 bits (116), Expect = 9e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235 ||| | ||| || ||||| |||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884 Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | || ||||| || |||||||| |||||||| || || ||||| || Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 8836 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| ||||||||| || | |||||||||||||| || || || | Sbjct 6870 TTTCTTTGGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 6811 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||||| ||||| || ||||| || || Sbjct 6810 TTTCCATGGCAATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTC 6756 >seq2306809 Length=138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 ||||| || || || || || || || ||||| | ||||| || ||||| || || Sbjct 3 TTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTTGG 62 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 ||||| || || ||||||| ||||||||||| |||||||| || ||||| || || | Sbjct 63 CAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGC 122 Query 48570 ACATGTTTAATAAAAT 48585 ||||| |||||||| Sbjct 123 ACATGGGAAATAAAAT 138 >seq2658871 Length=189 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 85 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 144 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| |||||||||||||| ||||||||||| Sbjct 145 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667850147123040