Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 217 2e-51
seq58757 127 3e-24
seq141641 116 5e-21
seq273157 105 9e-18
seq85459 105 9e-18
seq2306809 87.8 2e-12
seq2658871 86.0 8e-12
>seq28392
Length=738
Score = 217 bits (240), Expect = 2e-51
Identities = 285/395 (72%), Gaps = 0/395 (0%)
Strand=Plus/Plus
Query 47877 AAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCA 47936
|| || ||||| || || |||| ||| |||||||||||||| ||||||||||| || |
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 47937 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT 47996
| ||| || |||| || | || || ||||||||||| ||||| || || ||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 47997 CTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAAC 48056
||||||| || ||||| || || || || || || || |||||||| || |||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 48057 TCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGA 48116
|| ||||| || | || |||| || ||||| | |||| | | || |||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240
Query 48117 TACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTA 48176
| ||||| ||||| ||||| | || ||||| ||||| || | ||| |||||||| |||
Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300
Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236
|| | ||| | ||||| ||||| || ||||| ||||| ||||| |||||||| |||||
Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360
Query 48237 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 48271
| ||| ||||| || |||||||| |||||||| ||
Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 395
>seq58757
Length=22028
Score = 127 bits (140), Expect = 3e-24
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | ||
Sbjct 18138 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 18197
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| |||||||| || |||||||| |||||||| ||||| || || | | ||||||
Sbjct 18198 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 18257
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 18258 TTTCTTATACCAT 18270
>seq141641
Length=332
Score = 116 bits (128), Expect = 5e-21
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582
||||||| ||||||||||| |||||||| || ||||| || || | ||||| |||||
Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273
Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642
||| | | || | | |||| | ||||| | || || || || | || || |
Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCT 213
Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702
| |||||||||||||| || ||||| ||||| |||||||| | ||| |||||| |||||
Sbjct 212 CCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATT 153
Query 48703 GGATTGGGAAAATAACAAA 48721
|| || || || |||||
Sbjct 152 TAATAGGAAAGATGACAAA 134
>seq273157
Length=43465
Score = 105 bits (116), Expect = 9e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| || |||||||| || |||
Sbjct 39430 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 39371
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|||||||||||||| | || || || || ||||| || || | ||| | |||||||
Sbjct 39370 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 39311
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
|| || || ||||||||| ||
Sbjct 39310 ATGTGTTGTGGTCTTTCAGCC 39290
>seq85459
Length=10496
Score = 105 bits (116), Expect = 9e-18
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235
||| | ||| || ||||| |||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884
Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
| || ||||| || |||||||| |||||||| || || ||||| ||
Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 8836
Score = 91.5 bits (100), Expect = 2e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450
|||| ||| |||||||| ||||||||| || | |||||||||||||| || || || |
Sbjct 6870 TTTCTTTGGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 6811
Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
|||| || || || || || || || ||||||| ||||| || ||||| || ||
Sbjct 6810 TTTCCATGGCAATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTC 6756
>seq2306809
Length=138
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509
||||| || || || || || || || ||||| | ||||| || ||||| || ||
Sbjct 3 TTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTTGG 62
Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569
||||| || || ||||||| ||||||||||| |||||||| || ||||| || || |
Sbjct 63 CAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGC 122
Query 48570 ACATGTTTAATAAAAT 48585
||||| ||||||||
Sbjct 123 ACATGGGAAATAAAAT 138
>seq2658871
Length=189
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| |||||||| | ||||| || || || | ||||| || || ||||| || ||
Sbjct 85 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 144
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
|||| ||| |||||||||||||| |||||||||||
Sbjct 145 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 667850147123040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |