Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 208 1e-48
seq58757 132 7e-26
seq141641 118 1e-21
seq273157 104 3e-17
seq142543 102 1e-16
seq85459 96.9 5e-15
seq2658871 86.0 9e-12
seq373702 84.2 3e-11
>seq28392
Length=738
Score = 208 bits (230), Expect = 1e-48
Identities = 283/395 (72%), Gaps = 0/395 (0%)
Strand=Plus/Plus
Query 46366 AAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACA 46425
|| || ||||| || || |||| ||| |||||||||||||| ||||| ||||| ||
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 46426 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAC 46485
| ||| || |||| || | || || ||||||||||| ||||| || || |||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 46486 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAAC 46545
||||||| || ||||| || ||||| || || || || |||||||| || |||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 46546 TCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA 46605
|| ||||| || | || |||| ||||| | ||||| | | || |||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240
Query 46606 TGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTA 46665
|||| || ||||| ||||| | || ||||| ||||| || | || |||||||| |||
Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300
Query 46666 ATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATA 46725
|| | ||| | ||||| ||||| |||||||| ||||| || || |||||||| |||||
Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360
Query 46726 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 46760
| ||| ||||| || |||||||| |||||||| ||
Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 395
>seq58757
Length=22028
Score = 132 bits (146), Expect = 7e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | ||
Sbjct 18138 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 18197
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| |||||||| || ||||||||||||||||| ||||| || || | | ||||||
Sbjct 18198 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 18257
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 18258 TTTCTTATACCAT 18270
>seq141641
Length=332
Score = 118 bits (130), Expect = 1e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072
|||||| ||||| ||||| |||||||| || ||||| || |||| ||||| ||||||
Sbjct 331 CAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAA 272
Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132
|| | | || || | |||| | ||||| | || || || || | || || ||
Sbjct 271 ATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTC 212
Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192
||||||||||| || || ||||| ||||| |||||||| | ||| |||||| | ||||
Sbjct 211 CTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTT 152
Query 47193 GATCGGAAAAATAACAAA 47210
|| ||||| || |||||
Sbjct 151 AATAGGAAAGATGACAAA 134
>seq273157
Length=43465
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| |||| || ||||| ||||| || ||||| || |||||||| || |||
Sbjct 39430 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 39371
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|||||||||||| | || || ||||| || ||||| || |||| || | |||||||
Sbjct 39370 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 39311
Query 77114 ATATGCTGAGGTCGTTC 77130
|| || || |||| |||
Sbjct 39310 ATGTGTTGTGGTCTTTC 39294
Score = 102 bits (112), Expect = 1e-16
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| |||| ||| || ||||| ||||| | || || || || || || || || || ||
Sbjct 35131 CTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGATG 35072
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
||||||||||| || | ||||| |||| || ||| | || || || |||||||| | |
Sbjct 35071 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCAGT 35012
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
|| | |||||| || || | |||| ||||| || ||||||||||
Sbjct 35011 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 34966
>seq142543
Length=7870
Score = 102 bits (112), Expect = 1e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | || || ||||| ||||| || ||||| ||||| | || |
Sbjct 6767 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCT 6826
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || |
Sbjct 6827 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 6886
Query 46772 CGAC 46775
| ||
Sbjct 6887 CCAC 6890
>seq85459
Length=10496
Score = 96.9 bits (106), Expect = 5e-15
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 46665 AATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATAT 46724
||| | ||| || ||||| ||||| |||||||||||||| || || |||||||| |||||
Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884
Query 46725 AGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGAC 46775
| || ||||| || |||||||| |||||||| || || || || || ||
Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTAC 8833
Score = 93.3 bits (102), Expect = 6e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||||| || ||||| || | |||||||||||||| ||||| |||||||| || ||
Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
|| || || || || ||||||| ||||| |||||||| || |||
Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCT 6755
>seq2658871
Length=189
Score = 86.0 bits (94), Expect = 9e-12
Identities = 102/138 (74%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340
||| |||||| |||| || | ||| ||| ||| | |||||| |||||||| |
Sbjct 42 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATCCT 101
Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400
|| || || ||||| | ||||| || || ||||| || || |||| ||| ||||||||
Sbjct 102 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 161
Query 46401 CATAAAATCAAACGGATT 46418
|||||| ||||| |||||
Sbjct 162 CATAAAGTCAAATGGATT 179
>seq373702
Length=5363
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| || ||| |
Sbjct 1700 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATGTCAGG 1641
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
|| ||||| ||||| || |||||||
Sbjct 1640 GTACTGGATTGGAAAGATGACAAATC 1615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685410578291520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |