Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq249707 93.3 6e-14 >seq249707 Length=409 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 100322 CAACCATCTGGAACAGACACGTACTCAGCTAGGACGCACTCCGCGCACATTACCTAAATT 100381 ||||||| ||||||||| || || ||||| | ||||| ||| | | || || | Sbjct 85 CAACCATATGGAACAGATCCGCACCCAGCTGGCGCGCACGCCGAAGAAGCTGCCGGAACT 144 Query 100382 GGTTATCAACCGTAAGCCTGACTCTATCTTCGACTATAAGTTTGAAGACTTCGAGATTGA 100441 ||| ||||| |||||||| | || |||| ||||| ||||| |||||||||||||||| Sbjct 145 GGTGATCAAGCGTAAGCCGGCGTCGATCTATGACTACAAGTTCGAAGACTTCGAGATTGT 204 Query 100442 GGACTACGA 100450 || |||||| Sbjct 205 GGGCTACGA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705927487097160