Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031048.1
Length=41918
Score E
Sequences producing significant alignments: (Bits) Value
seq3088487 116 1e-21
seq268701 109 1e-19
seq2951953 107 5e-19
seq2966539 91.5 4e-14
seq2799564 87.8 5e-13
seq2948836 84.2 6e-12
>seq3088487
Length=16894
Score = 116 bits (128), Expect = 1e-21
Identities = 321/475 (68%), Gaps = 19/475 (4%)
Strand=Plus/Minus
Query 17256 CGATGGCCCAAACACCACCGACAACGCAGCCATTGCCTACCGTGGCGACTTCGGCAGCAA 17315
||| || || ||||| || || | || ||||| ||| || || |||||||||||
Sbjct 10043 CGACGGGCCGAACACAACTGATGAAGCCGCCATGGCCCACGCCCAGGAGTTCGGCAGCAA 9984
Query 17316 ACGCGTGTTTGTTGTTGACCCGGCAGTGTTGGTTCTGG---ACGATGACG-GCAACACCG 17371
|||| | | ||||| |||| || | || ||| ||| || | |||| |||
Sbjct 9983 ACGCTGCTACCTGGTTGATCCGGGCGTCCAG-TTGTGGGACACGCTGGAGAGCAAAACCA 9925
Query 17372 TTGTTGACCCGGTATCGGCGCGCGTAGCTGGTCTGATT-GCCCGCATTGATAACCAGCTT 17430
| | || |||| |||||| ||| ||||| || ||| ||| | | ||| ||
Sbjct 9924 TCGATGCACCGGCCTCGGCGTTCGTGGCTGG-CTTATTCGCCTGGACCGATGCGGAGTAC 9866
Query 17431 GGTTTCTGGTGGTCACCGTCTAACCAGGAAATCTACGGCATC-CAGGGAACTGCGCGCCA 17489
|| ||||||| ||| ||||| ||| | || | ||||||| | |||| || ||||||
Sbjct 9865 GGGTTCTGGTCGTCGCCGTCAAACAAAGAGTTTGTCGGCATCACCGGGACCT-CGCGCCC 9807
Query 17490 GATTGATTTCGTTCTGGGTGACGCTTCCAGCCGTGCCAACCTGCTGAACGAAAACGAAG- 17548
| | || ||| | || |||| || |||| |||||||| || ||| || | ||
Sbjct 9806 GGTGGAGTTCCTGGATGGGGACGAAACCTGCCGGGCCAACCTCCTCAAC-AACGCAAACA 9748
Query 17549 TGGCCACGATTATTCGCCAGGACGGTTTCCGCCTGTGGGGTAACCGCAC-CTGTTCAAGC 17607
| |||| || || ||| | | ||||| ||||||||||| ||||| || |||| | |
Sbjct 9747 TCACCACCATCATCCGCGACGGCGGTTATCGCCTGTGGGGCAACCGTACGCTGTCCTCG- 9689
Query 17608 GATCAGAAATGGGCATTCCTGTGCGTGGTGCGTACCGCTGACATCATCAATGAC---AGC 17664
|||| ||| |||||||| | | ||||| |||| || ||| ||| ||| | |
Sbjct 9688 GATCCGAAGTGGGCATTTGTCACCCGCGTGCGCACCGTGGATATCGTCATGGACGCGATC 9629
Query 17665 CTGGCGCGTAACCACATGTGGGCGGTTGACCGTGGCATCACCAAAAATTACGTCA 17719
|| || || | |||| ||||| || ||||||||||||||||| | ||| |||
Sbjct 9628 CTCGC-CGGA--CACAAATGGGCAGTCGACCGTGGCATCACCAAGACCTACATCA 9577
>seq268701
Length=8118
Score = 109 bits (120), Expect = 1e-19
Identities = 131/175 (75%), Gaps = 5/175 (3%)
Strand=Plus/Plus
Query 26908 GCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCA 26967
||| | |||| | || |||||| |||||||| |||| | ||| | | || |||
Sbjct 7925 GCCTTGCATGTCGACCACGATTTCGGTGGTGTAACGCTTGATGCCGTCTTTTTC---CCA 7981
Query 26968 TTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACC 27027
| |||||| |||| |||||||||| | |||| ||||||||||||||||||||
Sbjct 7982 CTCGCGGGTTTGCAGTTTGCCTTCAATGTAAACCTGCGAACCTTTGCGCAGGTATTCACC 8041
Query 27028 AGCGATTTCCGCCAGCTTGCCGAAGAT-GACAACGCGGTGCCATTCCGTCTGCTC 27081
|||||||| |||| ||||||||| || ||| || ||||||||||| || | |||
Sbjct 8042 GGCGATTTCTGCCACCTTGCCGAACATCGAC-ACACGGTGCCATTCGGTTTTCTC 8095
>seq2951953
Length=451
Score = 107 bits (118), Expect = 5e-19
Identities = 160/224 (71%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 26926 GATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACC 26985
||||||||||||||| |||| | ||| | | || ||| | |||||| ||||
Sbjct 223 GATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTC---CCACTCGCGGGTTTGCAGCTT 279
Query 26986 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTT 27045
|||||| ||| | |||| |||||||||||||| ||||||||||| || || | |||
Sbjct 280 GCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACCAGCGATCTCTGCAACCTT 339
Query 27046 GCCGAA-GATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTTAT 27104
|||||| | ||| ||||||||||| || || | |||||| | ||| || ||| |
Sbjct 340 GCCGAACAACGAC-ACGCGGTGCCACTCGGTTTTCTCTTTGCGCTCGTTGGTCTGCTTGT 398
Query 27105 CTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCG 27148
| |||||| |||| | || || | || || |||| || |||
Sbjct 399 CGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCG 442
>seq2966539
Length=502
Score = 91.5 bits (100), Expect = 4e-14
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 17506 GGTGACGCTTCCAGCCGTGCCAACCTGCTGAACGAAAACGAAGTGGCCACGATTATTCGC 17565
||||||| | |||||||||||||||||||| | | | | || ||||| ||||||
Sbjct 363 GGTGACGAGACGTGCCGTGCCAACCTGCTGAACAACGCCAATATCGCGACGATCATTCGC 422
Query 17566 CAGGACGGTTTCCGCCTGTGGGGTAACCGCACCTGTTCAAGCGATCAGAAATGGGCATTC 17625
| ||||| | |||| ||||||| |||||||| ||| || |||| ||| |||||||||
Sbjct 423 GATGACGGCTACCGCTTGTGGGGCAACCGCACGCTTTCGAGTGATCCGAAGTGGGCATTC 482
>seq2799564
Length=235
Score = 87.8 bits (96), Expect = 5e-13
Identities = 167/242 (69%), Gaps = 13/242 (5%)
Strand=Plus/Minus
Query 26932 AGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACCGCCTTC 26991
||||||||| |||| | ||| | | || ||| | |||||| |||| ||||||
Sbjct 235 AGTGGTGTAACGCTTGATGCCGTCTTTTTC---CCACTCGCGGGTTTGCAGTTTGCCTTC 179
Query 26992 AATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTTGCCGAA 27051
||| | |||| |||||||||||||| || || ||||| || || | |||||||||
Sbjct 178 GATGTAAACCTGCGAACCTTTGCGCAGGTACTCGCCGGCGATCTCTGCAACCTTGCCGAA 119
Query 27052 GAT-GACAACGCGGTGCCATTCCGTCTGCT----CTTTTGGTTCGCCTGTGGCCTTATCT 27106
|| |||| ||||||||||||| || | || ||| || ||| || ||| ||
Sbjct 118 CATCGACA-CGCGGTGCCATTCGGTTTTCTCGACCTTCTG----GCCGGTCTGCTTGTCA 64
Query 27107 TTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCATGTAG 27166
|||||| |||| | || || | || || |||| || ||| ||| |||| ||||
Sbjct 63 GTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGTTAGGCAAGTAG 4
Query 27167 CG 27168
||
Sbjct 3 CG 2
>seq2948836
Length=441
Score = 84.2 bits (92), Expect = 6e-12
Identities = 85/108 (79%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 17519 GCCGTGCCAACCTGCTGAACGAAAACGAAGTGGCCACGATTATTCGCCAGGACGGTTTCC 17578
|||| ||||||||||||||| | | | | || ||||| |||||| | ||||| | |
Sbjct 209 GCCGGGCCAACCTGCTGAACAACGCCAACATCGCGACGATCATTCGCGACGACGGCTATC 150
Query 17579 GCCTGTGGGGTAACCGCAC-CTGTTCAAGCGATCAGAAATGGGCATTC 17625
|| ||||||| |||||||| ||| || ||||||| ||| |||||||||
Sbjct 149 GCTTGTGGGGGAACCGCACGCTG-TCGAGCGATCCGAAGTGGGCATTC 103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129100820054160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |