Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq3088487 116 1e-21 seq268701 109 1e-19 seq2951953 107 5e-19 seq2966539 91.5 4e-14 seq2799564 87.8 5e-13 seq2948836 84.2 6e-12 >seq3088487 Length=16894 Score = 116 bits (128), Expect = 1e-21 Identities = 321/475 (68%), Gaps = 19/475 (4%) Strand=Plus/Minus Query 17256 CGATGGCCCAAACACCACCGACAACGCAGCCATTGCCTACCGTGGCGACTTCGGCAGCAA 17315 ||| || || ||||| || || | || ||||| ||| || || ||||||||||| Sbjct 10043 CGACGGGCCGAACACAACTGATGAAGCCGCCATGGCCCACGCCCAGGAGTTCGGCAGCAA 9984 Query 17316 ACGCGTGTTTGTTGTTGACCCGGCAGTGTTGGTTCTGG---ACGATGACG-GCAACACCG 17371 |||| | | ||||| |||| || | || ||| ||| || | |||| ||| Sbjct 9983 ACGCTGCTACCTGGTTGATCCGGGCGTCCAG-TTGTGGGACACGCTGGAGAGCAAAACCA 9925 Query 17372 TTGTTGACCCGGTATCGGCGCGCGTAGCTGGTCTGATT-GCCCGCATTGATAACCAGCTT 17430 | | || |||| |||||| ||| ||||| || ||| ||| | | ||| || Sbjct 9924 TCGATGCACCGGCCTCGGCGTTCGTGGCTGG-CTTATTCGCCTGGACCGATGCGGAGTAC 9866 Query 17431 GGTTTCTGGTGGTCACCGTCTAACCAGGAAATCTACGGCATC-CAGGGAACTGCGCGCCA 17489 || ||||||| ||| ||||| ||| | || | ||||||| | |||| || |||||| Sbjct 9865 GGGTTCTGGTCGTCGCCGTCAAACAAAGAGTTTGTCGGCATCACCGGGACCT-CGCGCCC 9807 Query 17490 GATTGATTTCGTTCTGGGTGACGCTTCCAGCCGTGCCAACCTGCTGAACGAAAACGAAG- 17548 | | || ||| | || |||| || |||| |||||||| || ||| || | || Sbjct 9806 GGTGGAGTTCCTGGATGGGGACGAAACCTGCCGGGCCAACCTCCTCAAC-AACGCAAACA 9748 Query 17549 TGGCCACGATTATTCGCCAGGACGGTTTCCGCCTGTGGGGTAACCGCAC-CTGTTCAAGC 17607 | |||| || || ||| | | ||||| ||||||||||| ||||| || |||| | | Sbjct 9747 TCACCACCATCATCCGCGACGGCGGTTATCGCCTGTGGGGCAACCGTACGCTGTCCTCG- 9689 Query 17608 GATCAGAAATGGGCATTCCTGTGCGTGGTGCGTACCGCTGACATCATCAATGAC---AGC 17664 |||| ||| |||||||| | | ||||| |||| || ||| ||| ||| | | Sbjct 9688 GATCCGAAGTGGGCATTTGTCACCCGCGTGCGCACCGTGGATATCGTCATGGACGCGATC 9629 Query 17665 CTGGCGCGTAACCACATGTGGGCGGTTGACCGTGGCATCACCAAAAATTACGTCA 17719 || || || | |||| ||||| || ||||||||||||||||| | ||| ||| Sbjct 9628 CTCGC-CGGA--CACAAATGGGCAGTCGACCGTGGCATCACCAAGACCTACATCA 9577 >seq268701 Length=8118 Score = 109 bits (120), Expect = 1e-19 Identities = 131/175 (75%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 26908 GCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCA 26967 ||| | |||| | || |||||| |||||||| |||| | ||| | | || ||| Sbjct 7925 GCCTTGCATGTCGACCACGATTTCGGTGGTGTAACGCTTGATGCCGTCTTTTTC---CCA 7981 Query 26968 TTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACC 27027 | |||||| |||| |||||||||| | |||| |||||||||||||||||||| Sbjct 7982 CTCGCGGGTTTGCAGTTTGCCTTCAATGTAAACCTGCGAACCTTTGCGCAGGTATTCACC 8041 Query 27028 AGCGATTTCCGCCAGCTTGCCGAAGAT-GACAACGCGGTGCCATTCCGTCTGCTC 27081 |||||||| |||| ||||||||| || ||| || ||||||||||| || | ||| Sbjct 8042 GGCGATTTCTGCCACCTTGCCGAACATCGAC-ACACGGTGCCATTCGGTTTTCTC 8095 >seq2951953 Length=451 Score = 107 bits (118), Expect = 5e-19 Identities = 160/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 26926 GATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACC 26985 ||||||||||||||| |||| | ||| | | || ||| | |||||| |||| Sbjct 223 GATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTC---CCACTCGCGGGTTTGCAGCTT 279 Query 26986 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTT 27045 |||||| ||| | |||| |||||||||||||| ||||||||||| || || | ||| Sbjct 280 GCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACCAGCGATCTCTGCAACCTT 339 Query 27046 GCCGAA-GATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTTAT 27104 |||||| | ||| ||||||||||| || || | |||||| | ||| || ||| | Sbjct 340 GCCGAACAACGAC-ACGCGGTGCCACTCGGTTTTCTCTTTGCGCTCGTTGGTCTGCTTGT 398 Query 27105 CTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCG 27148 | |||||| |||| | || || | || || |||| || ||| Sbjct 399 CGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCG 442 >seq2966539 Length=502 Score = 91.5 bits (100), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 17506 GGTGACGCTTCCAGCCGTGCCAACCTGCTGAACGAAAACGAAGTGGCCACGATTATTCGC 17565 ||||||| | |||||||||||||||||||| | | | | || ||||| |||||| Sbjct 363 GGTGACGAGACGTGCCGTGCCAACCTGCTGAACAACGCCAATATCGCGACGATCATTCGC 422 Query 17566 CAGGACGGTTTCCGCCTGTGGGGTAACCGCACCTGTTCAAGCGATCAGAAATGGGCATTC 17625 | ||||| | |||| ||||||| |||||||| ||| || |||| ||| ||||||||| Sbjct 423 GATGACGGCTACCGCTTGTGGGGCAACCGCACGCTTTCGAGTGATCCGAAGTGGGCATTC 482 >seq2799564 Length=235 Score = 87.8 bits (96), Expect = 5e-13 Identities = 167/242 (69%), Gaps = 13/242 (5%) Strand=Plus/Minus Query 26932 AGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACCGCCTTC 26991 ||||||||| |||| | ||| | | || ||| | |||||| |||| |||||| Sbjct 235 AGTGGTGTAACGCTTGATGCCGTCTTTTTC---CCACTCGCGGGTTTGCAGTTTGCCTTC 179 Query 26992 AATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTTGCCGAA 27051 ||| | |||| |||||||||||||| || || ||||| || || | ||||||||| Sbjct 178 GATGTAAACCTGCGAACCTTTGCGCAGGTACTCGCCGGCGATCTCTGCAACCTTGCCGAA 119 Query 27052 GAT-GACAACGCGGTGCCATTCCGTCTGCT----CTTTTGGTTCGCCTGTGGCCTTATCT 27106 || |||| ||||||||||||| || | || ||| || ||| || ||| || Sbjct 118 CATCGACA-CGCGGTGCCATTCGGTTTTCTCGACCTTCTG----GCCGGTCTGCTTGTCA 64 Query 27107 TTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCATGTAG 27166 |||||| |||| | || || | || || |||| || ||| ||| |||| |||| Sbjct 63 GTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGTTAGGCAAGTAG 4 Query 27167 CG 27168 || Sbjct 3 CG 2 >seq2948836 Length=441 Score = 84.2 bits (92), Expect = 6e-12 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 17519 GCCGTGCCAACCTGCTGAACGAAAACGAAGTGGCCACGATTATTCGCCAGGACGGTTTCC 17578 |||| ||||||||||||||| | | | | || ||||| |||||| | ||||| | | Sbjct 209 GCCGGGCCAACCTGCTGAACAACGCCAACATCGCGACGATCATTCGCGACGACGGCTATC 150 Query 17579 GCCTGTGGGGTAACCGCAC-CTGTTCAAGCGATCAGAAATGGGCATTC 17625 || ||||||| |||||||| ||| || ||||||| ||| ||||||||| Sbjct 149 GCTTGTGGGGGAACCGCACGCTG-TCGAGCGATCCGAAGTGGGCATTC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129100820054160