Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031058.1
Length=58566
Score E
Sequences producing significant alignments: (Bits) Value
seq331440 143 1e-29
seq2923225 96.9 1e-15
>seq331440
Length=501
Score = 143 bits (158), Expect = 1e-29
Identities = 259/374 (69%), Gaps = 16/374 (4%)
Strand=Plus/Minus
Query 2748 GCGAACATCATGCCCGCGCTCAACACCGTGAATCCGACGCGCCCGTACTATCGGGCCTGG 2807
|| ||||| | || ||||| ||||| || || || || ||| | || |||||||||
Sbjct 487 GCAAACATTCTCCCGGCGCTGAACACTGTCAACCCAACCATGCCGGATTACCGGGCCTGG 428
Query 2808 TGCTGGTTCATTGGTGTGCCCGACGGTCTGAACCACTATTACGACATG-GCGGAATATGC 2866
|||||||| | || || || ||||| |||||||||| |||||| || || ||||
Sbjct 427 TGCTGGTTGCTCGGCGTACCTGACGGCTTGAACCACTACTACGACCTGTGC-----ATGC 373
Query 2867 ACGCA----CCGCCAACGACCCCGACTGGGCGCTGTTCCACTGGACGTCGGAAGAGATTC 2922
| || | | ||| ||||| ||| |||||||||||| |||| |||||||
Sbjct 372 AGGCCGAATCAGGCAATGACCCGAACTTCCGTGTGTTCCACTGGAAATCGGCCGAGATTC 313
Query 2923 TCCCGCCAGACGTCATTGAAGCTGCGAAGCGCACCATGTCGCGGAAGCAGTACAATCAGG 2982
| ||| | ||||| || || || |||||| |||||||| ||||||| ||| ||||
Sbjct 312 TTCCGGCTGACGTAATGGACGCAATGAAGCGGGCCATGTCGGCCAAGCAGTTCAAGCAGG 253
Query 2983 AATATCGAGCGAGCTTCGAGACCGCCAGCGGTCGTATCTATGAGGACTACTCGAAAGAGA 3042
||| | ||| ||||| || || || || ||||| ||||||||| || | ||
Sbjct 252 AATTTGAAGCATCGTTCGAAACGGCGTCTGGCCGAATCTACGAGGACTACAGTAAGGCGA 193
Query 3043 ATTTCACAACCGA-GCGG--ATCCTCCCTCACGAAGCGCTGCACTGGACGCACGACCAGA 3099
| ||| || || || | || || || || |||| |||| |||||||||||
Sbjct 192 A---CACCACGGATGCAGCCATTGAGCCGCATGAGCAGCTGATGTGGATGCACGACCAGA 136
Query 3100 ACTTCACCCCGCTG 3113
||||||| || |||
Sbjct 135 ACTTCACGCCTCTG 122
>seq2923225
Length=375
Score = 96.9 bits (106), Expect = 1e-15
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 3465 TGGTGCCACAAAGGCTTGAGCACTGTGCAGCTCCAGGCAGGTTCGTCTTTCCAAGAGGAT 3524
||||||||||| ||||||||||| || ||||| || || ||| | ||||| || ||
Sbjct 343 TGGTGCCACAAGGGCTTGAGCACGGTTCAGCTTCAAATGGGCTCGACATTCCAGGAAGAC 284
Query 3525 CAAAAGAACCAGTATCAGCACATCACCACAGCGATCGGGTATTTTATTGAC 3575
|| |||||| | || |||||||||||||| |||||||| |||| || |||
Sbjct 283 CAGAAGAACGACTACCAGCACATCACCACGGCGATCGGCTATTGCATCGAC 233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 180420553871296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |