Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq331440 143 1e-29 seq2923225 96.9 1e-15 >seq331440 Length=501 Score = 143 bits (158), Expect = 1e-29 Identities = 259/374 (69%), Gaps = 16/374 (4%) Strand=Plus/Minus Query 2748 GCGAACATCATGCCCGCGCTCAACACCGTGAATCCGACGCGCCCGTACTATCGGGCCTGG 2807 || ||||| | || ||||| ||||| || || || || ||| | || ||||||||| Sbjct 487 GCAAACATTCTCCCGGCGCTGAACACTGTCAACCCAACCATGCCGGATTACCGGGCCTGG 428 Query 2808 TGCTGGTTCATTGGTGTGCCCGACGGTCTGAACCACTATTACGACATG-GCGGAATATGC 2866 |||||||| | || || || ||||| |||||||||| |||||| || || |||| Sbjct 427 TGCTGGTTGCTCGGCGTACCTGACGGCTTGAACCACTACTACGACCTGTGC-----ATGC 373 Query 2867 ACGCA----CCGCCAACGACCCCGACTGGGCGCTGTTCCACTGGACGTCGGAAGAGATTC 2922 | || | | ||| ||||| ||| |||||||||||| |||| ||||||| Sbjct 372 AGGCCGAATCAGGCAATGACCCGAACTTCCGTGTGTTCCACTGGAAATCGGCCGAGATTC 313 Query 2923 TCCCGCCAGACGTCATTGAAGCTGCGAAGCGCACCATGTCGCGGAAGCAGTACAATCAGG 2982 | ||| | ||||| || || || |||||| |||||||| ||||||| ||| |||| Sbjct 312 TTCCGGCTGACGTAATGGACGCAATGAAGCGGGCCATGTCGGCCAAGCAGTTCAAGCAGG 253 Query 2983 AATATCGAGCGAGCTTCGAGACCGCCAGCGGTCGTATCTATGAGGACTACTCGAAAGAGA 3042 ||| | ||| ||||| || || || || ||||| ||||||||| || | || Sbjct 252 AATTTGAAGCATCGTTCGAAACGGCGTCTGGCCGAATCTACGAGGACTACAGTAAGGCGA 193 Query 3043 ATTTCACAACCGA-GCGG--ATCCTCCCTCACGAAGCGCTGCACTGGACGCACGACCAGA 3099 | ||| || || || | || || || || |||| |||| ||||||||||| Sbjct 192 A---CACCACGGATGCAGCCATTGAGCCGCATGAGCAGCTGATGTGGATGCACGACCAGA 136 Query 3100 ACTTCACCCCGCTG 3113 ||||||| || ||| Sbjct 135 ACTTCACGCCTCTG 122 >seq2923225 Length=375 Score = 96.9 bits (106), Expect = 1e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 3465 TGGTGCCACAAAGGCTTGAGCACTGTGCAGCTCCAGGCAGGTTCGTCTTTCCAAGAGGAT 3524 ||||||||||| ||||||||||| || ||||| || || ||| | ||||| || || Sbjct 343 TGGTGCCACAAGGGCTTGAGCACGGTTCAGCTTCAAATGGGCTCGACATTCCAGGAAGAC 284 Query 3525 CAAAAGAACCAGTATCAGCACATCACCACAGCGATCGGGTATTTTATTGAC 3575 || |||||| | || |||||||||||||| |||||||| |||| || ||| Sbjct 283 CAGAAGAACGACTACCAGCACATCACCACGGCGATCGGCTATTGCATCGAC 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180420553871296