Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031061.1 Length=53431 Score E Sequences producing significant alignments: (Bits) Value seq336078 98.7 3e-16 >seq336078 Length=1095 Score = 98.7 bits (108), Expect = 3e-16 Identities = 178/250 (71%), Gaps = 14/250 (6%) Strand=Plus/Plus Query 46429 CCCGATGTGATCCTCGACTTCCGCAACCTCCCCTTCGCA-ACGGAATCGTTCAAGGTCGT 46487 || || |||||| | |||||||| |||| |||||| | ||| | | ||||| | || Sbjct 436 CCGGACGTGATCATGGACTTCCGGCACCTGCCCTTCCCCGACGCCAGC-TTCAACATGGT 494 Query 46488 AATCTTCGACCCACCACACCTCATCCGCGTCGGA-GCGAACGCATGGATGGGGAAGAAGT 46546 | ||||| ||||| ||||| | |||| ||| | ||| || ||| || || |||| Sbjct 495 GGTGTTCGATCCACCGCACCTGGTGCGCGCCGGCCGTGAAAGC-TGGCTGCGGCTCAAGT 553 Query 46547 ACGGGAGGCTGTCACCGAC--CTGGCGGGACGACCTGGCGGCGGGTTTCGCTGAGTGCTT 46604 |||| | ||| |||||| |||||| ||||||||| || ||||| ||||| || Sbjct 554 ACGGAATCCTG--ACCGACGACTGGCGCGACGACCTGCGCAAAGGCTTCGCGGAGTGTTT 611 Query 46605 CCGCGTGCTCGACGACTACGGCG---TCCTCATCTTCAAATGGAACGAGACGCAGATCCC 46661 ||| ||||| | | || ||| |||| |||||||||||||| || || ||||||| Sbjct 612 CCGGGTGCT-GCGGCCT--GGCCAGTTCCTGATCTTCAAATGGAATGAAACCCAGATCCG 668 Query 46662 GGTAAGTGAG 46671 || || ||| Sbjct 669 AGTCAGCGAG 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164591215022726