Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031061.1
Length=53431
Score E
Sequences producing significant alignments: (Bits) Value
seq336078 98.7 3e-16
>seq336078
Length=1095
Score = 98.7 bits (108), Expect = 3e-16
Identities = 178/250 (71%), Gaps = 14/250 (6%)
Strand=Plus/Plus
Query 46429 CCCGATGTGATCCTCGACTTCCGCAACCTCCCCTTCGCA-ACGGAATCGTTCAAGGTCGT 46487
|| || |||||| | |||||||| |||| |||||| | ||| | | ||||| | ||
Sbjct 436 CCGGACGTGATCATGGACTTCCGGCACCTGCCCTTCCCCGACGCCAGC-TTCAACATGGT 494
Query 46488 AATCTTCGACCCACCACACCTCATCCGCGTCGGA-GCGAACGCATGGATGGGGAAGAAGT 46546
| ||||| ||||| ||||| | |||| ||| | ||| || ||| || || ||||
Sbjct 495 GGTGTTCGATCCACCGCACCTGGTGCGCGCCGGCCGTGAAAGC-TGGCTGCGGCTCAAGT 553
Query 46547 ACGGGAGGCTGTCACCGAC--CTGGCGGGACGACCTGGCGGCGGGTTTCGCTGAGTGCTT 46604
|||| | ||| |||||| |||||| ||||||||| || ||||| ||||| ||
Sbjct 554 ACGGAATCCTG--ACCGACGACTGGCGCGACGACCTGCGCAAAGGCTTCGCGGAGTGTTT 611
Query 46605 CCGCGTGCTCGACGACTACGGCG---TCCTCATCTTCAAATGGAACGAGACGCAGATCCC 46661
||| ||||| | | || ||| |||| |||||||||||||| || || |||||||
Sbjct 612 CCGGGTGCT-GCGGCCT--GGCCAGTTCCTGATCTTCAAATGGAATGAAACCCAGATCCG 668
Query 46662 GGTAAGTGAG 46671
|| || |||
Sbjct 669 AGTCAGCGAG 678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 164591215022726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |