Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq3079416 127 1e-24 seq2871653 107 1e-18 seq2871652 104 1e-17 >seq3079416 Length=2120 Score = 127 bits (140), Expect = 1e-24 Identities = 209/299 (70%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 801 TGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCGCACCGGCACCGGCACGCTGA 860 ||| |||| || || | |||| | | |||| ||||| |||||||||||||| | | Sbjct 1425 TGCACGACGTCGTGACCAATGGCCTGACCAAGGGCGATCGTACCGGCACCGGCACCCGGG 1366 Query 861 GCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGGCTTCCCGCTGGTCACCACGA 920 | ||||| | |||| ||| || |||| |||| |||||||||||| | ||||| | Sbjct 1365 CCGTGTTCGCCCGCCAGTATCGGCACAACCTGGCCGACGGCTTCCCGCTGCTGACCACCA 1306 Query 921 AGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTGGTTCCTCAGTGGCGACACGA 980 || | ||||||||| | || |||| || | ||| | | || ||| |||| | Sbjct 1305 AGAAACTGCACTTCAAAAGCATCGCCAACGAGCTGATCTGGATGTTGAGCGGCAACACCA 1246 Query 981 ACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGACGAGTGGGCCGACGCCGGCG 1040 | | ||| ||| ||||| |||||||| ||||||||| || |||||| || | || Sbjct 1245 ATATCAAGTGGCTTAACGAAAACGGCGTGCGCATCTGGGATGAATGGGCCACCGAAGACG 1186 Query 1041 GAAACCTCGGTCCTGTCTACGGCGCGCAGTGG-CGGCACTGGCATGTCGAGGACGGAGG 1098 | |||| || || || ||||||| ||||||| | || ||||| | ||||||| || Sbjct 1185 GCGACCTGGGCCCGGTGTACGGCGAGCAGTGGACCGC-CTGGCCCACCAAGGACGGCGG 1128 >seq2871653 Length=292 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 894 CCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAAC 953 |||| |||||||||||| | ||||| ||| | || ||||| | || |||||| Sbjct 21 CCGACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCATTTCAAGAGCATCGCCAACGAAC 80 Query 954 TTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCA 1013 | | ||| | | |||||| |||| ||| | ||| ||||||||| |||||||| | | Sbjct 81 TGATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTCAACGAAAACGGCGTGAAAA 140 Query 1014 TCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGG- 1072 |||||||||| |||||| || | ||| |||| || || || ||||||| ||||||| Sbjct 141 TCTGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGGA 200 Query 1073 CGGCACTGGCATGTCGAGGACGGAGG 1098 | || ||||| | ||||||| || Sbjct 201 CCGC-CTGGCCGACCAAGGACGGCGG 225 >seq2871652 Length=292 Score = 104 bits (114), Expect = 1e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 894 CCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAAC 953 |||| |||||||||||| | ||||| ||| | || |||||| | || ||||| Sbjct 21 CCGACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCATTTCAAAAGCATCGCCAACGAAT 80 Query 954 TTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCA 1013 | | ||| | | |||||| | || ||| | ||| ||| ||||| |||||||| | | Sbjct 81 TGATCTGGATGTTGAGTGGCAATACCAACATCAAGTGGCTGAACGAAAACGGCGTGAAAA 140 Query 1014 TCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGG- 1072 |||||||||| |||||| || | ||| ||||||| || || ||||||| ||||||| Sbjct 141 TCTGGGACGAATGGGCCACCGAAGACGGCGACCTCGGCCCGGTATACGGCGAGCAGTGGA 200 Query 1073 CGGCACTGGCATGTCGAGGACGGAGG 1098 | || ||||| | ||||||| || Sbjct 201 CCGC-CTGGCCCACCAAGGACGGCGG 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 284984458038411