Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031074.1
Length=92580
Score E
Sequences producing significant alignments: (Bits) Value
seq3079416 127 1e-24
seq2871653 107 1e-18
seq2871652 104 1e-17
>seq3079416
Length=2120
Score = 127 bits (140), Expect = 1e-24
Identities = 209/299 (70%), Gaps = 2/299 (1%)
Strand=Plus/Minus
Query 801 TGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCGCACCGGCACCGGCACGCTGA 860
||| |||| || || | |||| | | |||| ||||| |||||||||||||| | |
Sbjct 1425 TGCACGACGTCGTGACCAATGGCCTGACCAAGGGCGATCGTACCGGCACCGGCACCCGGG 1366
Query 861 GCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGGCTTCCCGCTGGTCACCACGA 920
| ||||| | |||| ||| || |||| |||| |||||||||||| | ||||| |
Sbjct 1365 CCGTGTTCGCCCGCCAGTATCGGCACAACCTGGCCGACGGCTTCCCGCTGCTGACCACCA 1306
Query 921 AGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTGGTTCCTCAGTGGCGACACGA 980
|| | ||||||||| | || |||| || | ||| | | || ||| |||| |
Sbjct 1305 AGAAACTGCACTTCAAAAGCATCGCCAACGAGCTGATCTGGATGTTGAGCGGCAACACCA 1246
Query 981 ACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGACGAGTGGGCCGACGCCGGCG 1040
| | ||| ||| ||||| |||||||| ||||||||| || |||||| || | ||
Sbjct 1245 ATATCAAGTGGCTTAACGAAAACGGCGTGCGCATCTGGGATGAATGGGCCACCGAAGACG 1186
Query 1041 GAAACCTCGGTCCTGTCTACGGCGCGCAGTGG-CGGCACTGGCATGTCGAGGACGGAGG 1098
| |||| || || || ||||||| ||||||| | || ||||| | ||||||| ||
Sbjct 1185 GCGACCTGGGCCCGGTGTACGGCGAGCAGTGGACCGC-CTGGCCCACCAAGGACGGCGG 1128
>seq2871653
Length=292
Score = 107 bits (118), Expect = 1e-18
Identities = 149/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 894 CCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAAC 953
|||| |||||||||||| | ||||| ||| | || ||||| | || ||||||
Sbjct 21 CCGACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCATTTCAAGAGCATCGCCAACGAAC 80
Query 954 TTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCA 1013
| | ||| | | |||||| |||| ||| | ||| ||||||||| |||||||| | |
Sbjct 81 TGATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTCAACGAAAACGGCGTGAAAA 140
Query 1014 TCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGG- 1072
|||||||||| |||||| || | ||| |||| || || || ||||||| |||||||
Sbjct 141 TCTGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGGA 200
Query 1073 CGGCACTGGCATGTCGAGGACGGAGG 1098
| || ||||| | ||||||| ||
Sbjct 201 CCGC-CTGGCCGACCAAGGACGGCGG 225
>seq2871652
Length=292
Score = 104 bits (114), Expect = 1e-17
Identities = 148/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 894 CCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAAC 953
|||| |||||||||||| | ||||| ||| | || |||||| | || |||||
Sbjct 21 CCGACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCATTTCAAAAGCATCGCCAACGAAT 80
Query 954 TTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCA 1013
| | ||| | | |||||| | || ||| | ||| ||| ||||| |||||||| | |
Sbjct 81 TGATCTGGATGTTGAGTGGCAATACCAACATCAAGTGGCTGAACGAAAACGGCGTGAAAA 140
Query 1014 TCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGG- 1072
|||||||||| |||||| || | ||| ||||||| || || ||||||| |||||||
Sbjct 141 TCTGGGACGAATGGGCCACCGAAGACGGCGACCTCGGCCCGGTATACGGCGAGCAGTGGA 200
Query 1073 CGGCACTGGCATGTCGAGGACGGAGG 1098
| || ||||| | ||||||| ||
Sbjct 201 CCGC-CTGGCCCACCAAGGACGGCGG 225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 284984458038411
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |