Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq284340 80.6 7e-11 >seq284340 Length=15504 Score = 80.6 bits (88), Expect = 7e-11 Identities = 114/158 (72%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 32412 TTGCCGATCACGTTTTCCCACGGTCCGAACCACTCATAGTTGATACGGTCTTTCGTTGGC 32471 || ||||| ||||||||||| | |||||||| ||| |||| | | | |||| |||| Sbjct 1856 TTCCCGATGACGTTTTCCCATGCACCGAACCATTCAAAGTTCAGCCTGCCTTTGACTGGC 1915 Query 32472 GACATCGTGGTGATCACCGCATTTACCAACTGGGCCTCATAACCGAGAGTGCCGCTAACG 32531 | | | | ||| ||||| || || || | ||| ||||| || | | | ||||| | Sbjct 1916 GCCTTGGCGGTAATCACTGCGTTGACGAGCTGCGCCTCGTAGCTCAATGCGCCGCCGTTG 1975 Query 32532 AC-ATGA--GTTTTCTGCGCGACTGCGAATGGATTCAT 32566 || |||| || |||||||| || ||||| |||||||| Sbjct 1976 ACGATGAATGTCTTCTGCGCCACGGCGAAGGGATTCAT 2013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128613763474204