Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq308140 149 2e-31 seq2939440 127 6e-25 seq2939619 114 4e-21 >seq308140 Length=1303 Score = 149 bits (164), Expect = 2e-31 Identities = 270/386 (70%), Gaps = 18/386 (5%) Strand=Plus/Minus Query 40027 AGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATC---GCGTTGCGCGCCTTGATCCGAC 40083 ||| |||| || |||| |||||| |||| || || ||| |||| ||| || Sbjct 389 AGGACTTGCCCTGCACCCGCGCCACGTCACGGATTACAGCCTTGGCCGCC---ATCGAAC 333 Query 40084 CGAAGGTCCCGATCTGTG---CGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGA 40140 ||||||| |||||| || | ||| || || ||| || |||| ||||| || Sbjct 332 CGAAGGTGATGATCTGGCTCACGGCGTTG--CGGCC-GTATTTTTCGGCCACGTATTCGA 276 Query 40141 TCACGTCGCCCCGTCGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCG 40198 ||||| | | || | || ||| |||||||| ||| | |||||||||||| || || Sbjct 275 TCACGCGGTCGCGAC--CGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGAAACCCG 218 Query 40199 CTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT 40258 || |||||||||||||| ||||| | || ||| | ||||| ||||| ||||| Sbjct 217 TTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCGTATTCCAGCGGGTCAAGGTCGGTGAT 158 Query 40259 GCCGAGGCAG-TAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACA 40317 | ||| || || ||||||||||||||| |||| ||||| || || || ||| || Sbjct 157 -CTTCTGCACATAAGCCACCAGCGAACCGGCACCCGAACCACGGCCTGGGCCTACCGGCA 99 Query 40318 CGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACC 40377 ||||||| ||| ||||| ||| ||||| |||| ||||||||| ||||||| Sbjct 98 CGCCGTTGCTCTTAGCCCACTGGATAAAGTCCATTACGATCAGGAAGTAACCGGGGAACC 39 Query 40378 CCAGCTGGATGATCATGTCGATCTCG 40403 ||| |||||| || || || | |||| Sbjct 38 CCATCTGGATAATGATATCCAGCTCG 13 >seq2939440 Length=415 Score = 127 bits (140), Expect = 6e-25 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 40116 CCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAA--GTCGA 40173 ||||| ||||||| |||||| ||||||| | | || |||| ||| || ||||| Sbjct 252 CCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCG--GCCGTCCATGCAAAAGTCGA 195 Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233 ||| | |||||||||||| || || || |||||||||||||||||||| | || | | Sbjct 194 CGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTCAT 135 Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG 40293 | ||||| ||||| || || | ||| || ||||||||||||||| | | Sbjct 134 ATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCACCTG 75 Query 40294 AGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40353 | || || || || || ||| |||||||| | ||||||||| ||| ||||| | Sbjct 74 ACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15 Query 40354 CGACCAGGAAGTA 40366 ||| ||||||||| Sbjct 14 CGATCAGGAAGTA 2 >seq2939619 Length=415 Score = 114 bits (126), Expect = 4e-21 Identities = 183/256 (71%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 40116 CCGTACTTCTCGGTGACGTACCTGATCACG---TCGCC-CCGTCGCCGGTCATCGAAGTC 40171 ||||||||||||| ||||| |||||| |||| ||||| | || |||||| Sbjct 252 CCGTACTTCTCGGCCACGTATTCGATCACCCGATCGCGACCGTCCATG--CA--GAAGTC 197 Query 40172 GATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCC 40231 || ||| | |||||||||||| || || || ||||||||||| || ||||| | || | Sbjct 196 GACGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTC 137 Query 40232 GTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCA-GTAGGCGACCAGCGAACCGGCAG 40290 | | ||||| ||||| ||||| | ||| |||||| |||| ||| || ||| Sbjct 136 ATATTCCAACGGGTCAAGGTCGGTGAT-CTTCTGCACGTAGGCCACCAACGAGCCCGCAC 78 Query 40291 CCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGG 40350 | || ||||| || || || ||| |||||||| | ||||||||| ||| ||||| Sbjct 77 CTGACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCA 18 Query 40351 CGACGACCAGGAAGTA 40366 |||| ||||||||| Sbjct 17 TCACGATCAGGAAGTA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154267465109608