Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031078.1
Length=50082
Score E
Sequences producing significant alignments: (Bits) Value
seq308140 149 2e-31
seq2939440 127 6e-25
seq2939619 114 4e-21
>seq308140
Length=1303
Score = 149 bits (164), Expect = 2e-31
Identities = 270/386 (70%), Gaps = 18/386 (5%)
Strand=Plus/Minus
Query 40027 AGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATC---GCGTTGCGCGCCTTGATCCGAC 40083
||| |||| || |||| |||||| |||| || || ||| |||| ||| ||
Sbjct 389 AGGACTTGCCCTGCACCCGCGCCACGTCACGGATTACAGCCTTGGCCGCC---ATCGAAC 333
Query 40084 CGAAGGTCCCGATCTGTG---CGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGA 40140
||||||| |||||| || | ||| || || ||| || |||| ||||| ||
Sbjct 332 CGAAGGTGATGATCTGGCTCACGGCGTTG--CGGCC-GTATTTTTCGGCCACGTATTCGA 276
Query 40141 TCACGTCGCCCCGTCGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCG 40198
||||| | | || | || ||| |||||||| ||| | |||||||||||| || ||
Sbjct 275 TCACGCGGTCGCGAC--CGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGAAACCCG 218
Query 40199 CTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT 40258
|| |||||||||||||| ||||| | || ||| | ||||| ||||| |||||
Sbjct 217 TTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCGTATTCCAGCGGGTCAAGGTCGGTGAT 158
Query 40259 GCCGAGGCAG-TAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACA 40317
| ||| || || ||||||||||||||| |||| ||||| || || || ||| ||
Sbjct 157 -CTTCTGCACATAAGCCACCAGCGAACCGGCACCCGAACCACGGCCTGGGCCTACCGGCA 99
Query 40318 CGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACC 40377
||||||| ||| ||||| ||| ||||| |||| ||||||||| |||||||
Sbjct 98 CGCCGTTGCTCTTAGCCCACTGGATAAAGTCCATTACGATCAGGAAGTAACCGGGGAACC 39
Query 40378 CCAGCTGGATGATCATGTCGATCTCG 40403
||| |||||| || || || | ||||
Sbjct 38 CCATCTGGATAATGATATCCAGCTCG 13
>seq2939440
Length=415
Score = 127 bits (140), Expect = 6e-25
Identities = 181/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 40116 CCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAA--GTCGA 40173
||||| ||||||| |||||| ||||||| | | || |||| ||| || |||||
Sbjct 252 CCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCG--GCCGTCCATGCAAAAGTCGA 195
Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233
||| | |||||||||||| || || || |||||||||||||||||||| | || | |
Sbjct 194 CGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTCAT 135
Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG 40293
| ||||| ||||| || || | ||| || ||||||||||||||| | |
Sbjct 134 ATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCACCTG 75
Query 40294 AGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40353
| || || || || || ||| |||||||| | ||||||||| ||| ||||| |
Sbjct 74 ACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15
Query 40354 CGACCAGGAAGTA 40366
||| |||||||||
Sbjct 14 CGATCAGGAAGTA 2
>seq2939619
Length=415
Score = 114 bits (126), Expect = 4e-21
Identities = 183/256 (71%), Gaps = 10/256 (4%)
Strand=Plus/Minus
Query 40116 CCGTACTTCTCGGTGACGTACCTGATCACG---TCGCC-CCGTCGCCGGTCATCGAAGTC 40171
||||||||||||| ||||| |||||| |||| ||||| | || ||||||
Sbjct 252 CCGTACTTCTCGGCCACGTATTCGATCACCCGATCGCGACCGTCCATG--CA--GAAGTC 197
Query 40172 GATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCC 40231
|| ||| | |||||||||||| || || || ||||||||||| || ||||| | || |
Sbjct 196 GACGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTC 137
Query 40232 GTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCA-GTAGGCGACCAGCGAACCGGCAG 40290
| | ||||| ||||| ||||| | ||| |||||| |||| ||| || |||
Sbjct 136 ATATTCCAACGGGTCAAGGTCGGTGAT-CTTCTGCACGTAGGCCACCAACGAGCCCGCAC 78
Query 40291 CCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGG 40350
| || ||||| || || || ||| |||||||| | ||||||||| ||| |||||
Sbjct 77 CTGACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCA 18
Query 40351 CGACGACCAGGAAGTA 40366
|||| |||||||||
Sbjct 17 TCACGATCAGGAAGTA 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 154267465109608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |